Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 OR6C7P-201ENST00000547875 934 ntBASIC0.94□□□□□ -2.26
CCDC88BA6NC98 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.94□□□□□ -2.26
CCDC88BA6NC98 MIR3126-201ENST00000577443 74 ntBASIC0.94□□□□□ -2.26
CCDC88BA6NC98 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC0.94□□□□□ -2.26
CCDC88BA6NC98 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC0.94□□□□□ -2.26
CCDC88BA6NC98 MIR4713-201ENST00000582691 75 ntBASIC0.94□□□□□ -2.26
CCDC88BA6NC98 BNIP3P25-201ENST00000596023 559 ntBASIC0.94□□□□□ -2.26
CCDC88BA6NC98 PTENP1-201ENST00000447117 1215 ntBASIC0.93□□□□□ -2.26
CCDC88BA6NC98 HAR1A.1-201ENST00000459583 118 ntBASIC0.93□□□□□ -2.26
CCDC88BA6NC98 DYNLL1P5-201ENST00000467158 270 ntBASIC0.93□□□□□ -2.26
CCDC88BA6NC98 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
CCDC88BA6NC98 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC0.93□□□□□ -2.26
CCDC88BA6NC98 AC011260.1-201ENST00000578420 472 ntBASIC0.93□□□□□ -2.26
CCDC88BA6NC98 XIAPP1-201ENST00000603162 600 ntBASIC0.93□□□□□ -2.26
CCDC88BA6NC98 7SK.7-201ENST00000603504 247 ntBASIC0.93□□□□□ -2.26
CCDC88BA6NC98 AC087045.1-201ENST00000605856 382 ntBASIC0.93□□□□□ -2.26
CCDC88BA6NC98 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC0.93□□□□□ -2.26
CCDC88BA6NC98 AC027309.3-201ENST00000623419 351 ntBASIC0.93□□□□□ -2.26
CCDC88BA6NC98 AC091925.2-201ENST00000625059 256 ntBASIC0.93□□□□□ -2.26
CCDC88BA6NC98 AC010329.5-201ENST00000623497 2174 ntBASIC0.93□□□□□ -2.26
CCDC88BA6NC98 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC0.93□□□□□ -2.26
CCDC88BA6NC98 RNU6ATAC2P-201ENST00000387943 126 ntBASIC0.92□□□□□ -2.26
CCDC88BA6NC98 AC092047.1-201ENST00000424997 240 ntBASIC0.92□□□□□ -2.26
CCDC88BA6NC98 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC0.92□□□□□ -2.26
CCDC88BA6NC98 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC0.92□□□□□ -2.26
CCDC88BA6NC98 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC0.92□□□□□ -2.26
CCDC88BA6NC98 MTCYBP3-201ENST00000445588 1137 ntBASIC0.92□□□□□ -2.26
CCDC88BA6NC98 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC0.92□□□□□ -2.26
CCDC88BA6NC98 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
CCDC88BA6NC98 RNU6-362P-201ENST00000516736 90 ntBASIC0.92□□□□□ -2.26
CCDC88BA6NC98 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC0.92□□□□□ -2.26
CCDC88BA6NC98 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC0.92□□□□□ -2.26
CCDC88BA6NC98 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC0.92□□□□□ -2.26
CCDC88BA6NC98 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC0.92□□□□□ -2.26
CCDC88BA6NC98 MIR1197-201ENST00000408818 88 ntBASIC0.92□□□□□ -2.26
CCDC88BA6NC98 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC0.92□□□□□ -2.26
CCDC88BA6NC98 AL591043.1-201ENST00000432461 424 ntBASIC0.92□□□□□ -2.26
CCDC88BA6NC98 RNU11-2P-201ENST00000516898 142 ntBASIC0.92□□□□□ -2.26
CCDC88BA6NC98 RNA5SP337-201ENST00000517007 109 ntBASIC0.92□□□□□ -2.26
CCDC88BA6NC98 AP003355.1-201ENST00000518956 587 ntBASIC0.92□□□□□ -2.26
CCDC88BA6NC98 AC123912.3-201ENST00000600907 1367 ntBASIC0.91□□□□□ -2.26
CCDC88BA6NC98 AL049737.1-201ENST00000413920 1403 ntBASIC0.91□□□□□ -2.26
CCDC88BA6NC98 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.91□□□□□ -2.26
CCDC88BA6NC98 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC0.91□□□□□ -2.26
CCDC88BA6NC98 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC0.91□□□□□ -2.26
CCDC88BA6NC98 RNA5SP511-201ENST00000410487 115 ntBASIC0.91□□□□□ -2.26
CCDC88BA6NC98 TOMM22P2-201ENST00000430735 237 ntBASIC0.91□□□□□ -2.26
CCDC88BA6NC98 RPL23AP35-201ENST00000451906 501 ntBASIC0.91□□□□□ -2.26
CCDC88BA6NC98 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC0.91□□□□□ -2.26
CCDC88BA6NC98 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC0.91□□□□□ -2.26
CCDC88BA6NC98 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC0.91□□□□□ -2.26
CCDC88BA6NC98 RNU6-263P-201ENST00000363811 107 ntBASIC0.9□□□□□ -2.27
CCDC88BA6NC98 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC0.9□□□□□ -2.27
CCDC88BA6NC98 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC0.9□□□□□ -2.27
CCDC88BA6NC98 OR52A4P-202ENST00000481634 799 ntBASIC0.9□□□□□ -2.27
CCDC88BA6NC98 CBX3P3-201ENST00000508108 532 ntBASIC0.9□□□□□ -2.27
CCDC88BA6NC98 AP003497.1-201ENST00000528472 562 ntBASIC0.9□□□□□ -2.27
CCDC88BA6NC98 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC0.9□□□□□ -2.27
CCDC88BA6NC98 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC0.9□□□□□ -2.27
CCDC88BA6NC98 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC0.9□□□□□ -2.27
CCDC88BA6NC98 AP000776.1-201ENST00000530032 1663 ntBASIC0.89□□□□□ -2.27
CCDC88BA6NC98 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
CCDC88BA6NC98 MTND5P11-201ENST00000511037 1812 ntBASIC0.89□□□□□ -2.27
CCDC88BA6NC98 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC0.89□□□□□ -2.27
CCDC88BA6NC98 VTRNA1-3-201ENST00000365645 89 ntBASIC0.89□□□□□ -2.27
CCDC88BA6NC98 RNU6-272P-201ENST00000411028 104 ntBASIC0.89□□□□□ -2.27
CCDC88BA6NC98 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC0.89□□□□□ -2.27
CCDC88BA6NC98 AC092634.2-201ENST00000428146 1010 ntBASIC0.89□□□□□ -2.27
CCDC88BA6NC98 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC0.89□□□□□ -2.27
CCDC88BA6NC98 FGF7P5-201ENST00000441829 291 ntBASIC0.89□□□□□ -2.27
CCDC88BA6NC98 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC0.89□□□□□ -2.27
CCDC88BA6NC98 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC0.89□□□□□ -2.27
CCDC88BA6NC98 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC0.89□□□□□ -2.27
CCDC88BA6NC98 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC0.89□□□□□ -2.27
CCDC88BA6NC98 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
CCDC88BA6NC98 SCARNA11.3-201ENST00000517276 130 ntBASIC0.89□□□□□ -2.27
CCDC88BA6NC98 CARD18-203ENST00000532895 422 ntTSL 2 BASIC0.89□□□□□ -2.27
CCDC88BA6NC98 AC010186.2-204ENST00000537668 439 ntBASIC0.89□□□□□ -2.27
CCDC88BA6NC98 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC0.89□□□□□ -2.27
CCDC88BA6NC98 HSPE1P19-201ENST00000603327 295 ntBASIC0.89□□□□□ -2.27
CCDC88BA6NC98 AP006248.3-201ENST00000623580 594 ntBASIC0.89□□□□□ -2.27
CCDC88BA6NC98 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC0.89□□□□□ -2.27
CCDC88BA6NC98 MTND4P12-201ENST00000498999 1377 ntBASIC0.89□□□□□ -2.27
CCDC88BA6NC98 EDDM3CP-201ENST00000415977 425 ntBASIC0.88□□□□□ -2.27
CCDC88BA6NC98 AC074051.3-201ENST00000570238 358 ntBASIC0.88□□□□□ -2.27
CCDC88BA6NC98 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC0.88□□□□□ -2.27
CCDC88BA6NC98 AP003399.1-201ENST00000637534 361 ntBASIC0.88□□□□□ -2.27
CCDC88BA6NC98 TPTE2P4-201ENST00000258589 1605 ntBASIC0.87□□□□□ -2.27
CCDC88BA6NC98 PIGPP2-201ENST00000411569 458 ntBASIC0.87□□□□□ -2.27
CCDC88BA6NC98 RPL37P10-201ENST00000412884 288 ntBASIC0.87□□□□□ -2.27
CCDC88BA6NC98 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC0.87□□□□□ -2.27
CCDC88BA6NC98 AC099548.1-201ENST00000421443 426 ntBASIC0.87□□□□□ -2.27
CCDC88BA6NC98 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC0.87□□□□□ -2.27
CCDC88BA6NC98 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC0.87□□□□□ -2.27
CCDC88BA6NC98 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC0.87□□□□□ -2.27
CCDC88BA6NC98 RNU7-23P-201ENST00000459465 62 ntBASIC0.87□□□□□ -2.27
CCDC88BA6NC98 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC0.87□□□□□ -2.27
CCDC88BA6NC98 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC0.87□□□□□ -2.27
CCDC88BA6NC98 AC068276.1-201ENST00000605793 379 ntBASIC0.87□□□□□ -2.27
CCDC88BA6NC98 FRG1HP-204ENST00000617940 757 ntBASIC0.87□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms