Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC5.33□□□□□ -1.56
CHMP3Q9Y3E7 AC006023.2-201ENST00000609916 167 ntBASIC5.33□□□□□ -1.56
CHMP3Q9Y3E7 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC5.33□□□□□ -1.56
CHMP3Q9Y3E7 MIR8059-201ENST00000620427 81 ntBASIC5.33□□□□□ -1.56
CHMP3Q9Y3E7 AL353748.2-201ENST00000622148 471 ntBASIC5.33□□□□□ -1.56
CHMP3Q9Y3E7 AP001273.1-201ENST00000624493 3152 ntBASIC5.32□□□□□ -1.56
CHMP3Q9Y3E7 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CHMP3Q9Y3E7 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC5.32□□□□□ -1.56
CHMP3Q9Y3E7 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC5.32□□□□□ -1.56
CHMP3Q9Y3E7 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC5.32□□□□□ -1.56
CHMP3Q9Y3E7 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CHMP3Q9Y3E7 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC5.32□□□□□ -1.56
CHMP3Q9Y3E7 RNU6-708P-201ENST00000384217 107 ntBASIC5.32□□□□□ -1.56
CHMP3Q9Y3E7 RNU6-121P-201ENST00000410525 99 ntBASIC5.32□□□□□ -1.56
CHMP3Q9Y3E7 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC5.32□□□□□ -1.56
CHMP3Q9Y3E7 AC092423.1-201ENST00000430165 186 ntBASIC5.32□□□□□ -1.56
CHMP3Q9Y3E7 CKS1BP5-201ENST00000434172 273 ntBASIC5.32□□□□□ -1.56
CHMP3Q9Y3E7 OR4C10P-201ENST00000434991 931 ntBASIC5.32□□□□□ -1.56
CHMP3Q9Y3E7 AL359073.1-201ENST00000448036 403 ntBASIC5.32□□□□□ -1.56
CHMP3Q9Y3E7 AC022493.1-201ENST00000492984 337 ntBASIC5.32□□□□□ -1.56
CHMP3Q9Y3E7 RNA5SP471-201ENST00000516971 106 ntBASIC5.32□□□□□ -1.56
CHMP3Q9Y3E7 MIR2116-201ENST00000517221 80 ntBASIC5.32□□□□□ -1.56
CHMP3Q9Y3E7 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC5.32□□□□□ -1.56
CHMP3Q9Y3E7 MIR3160-1-201ENST00000577972 85 ntBASIC5.32□□□□□ -1.56
CHMP3Q9Y3E7 CPDP1-201ENST00000579660 283 ntBASIC5.32□□□□□ -1.56
CHMP3Q9Y3E7 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC5.32□□□□□ -1.56
CHMP3Q9Y3E7 FP236240.3-201ENST00000623061 327 ntBASIC5.32□□□□□ -1.56
CHMP3Q9Y3E7 AL512643.1-201ENST00000635735 524 ntBASIC5.32□□□□□ -1.56
CHMP3Q9Y3E7 U2.22-201ENST00000636441 106 ntBASIC5.32□□□□□ -1.56
CHMP3Q9Y3E7 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
CHMP3Q9Y3E7 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC5.32□□□□□ -1.56
CHMP3Q9Y3E7 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC5.32□□□□□ -1.56
CHMP3Q9Y3E7 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CHMP3Q9Y3E7 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CHMP3Q9Y3E7 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CHMP3Q9Y3E7 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC5.32□□□□□ -1.56
CHMP3Q9Y3E7 Z82217.1-201ENST00000625157 8149 ntBASIC5.31□□□□□ -1.56
CHMP3Q9Y3E7 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CHMP3Q9Y3E7 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CHMP3Q9Y3E7 SPRR2C-201ENST00000290702 219 ntBASIC5.31□□□□□ -1.56
CHMP3Q9Y3E7 RNU1-94P-201ENST00000362627 173 ntBASIC5.31□□□□□ -1.56
CHMP3Q9Y3E7 RNU1-35P-201ENST00000362782 153 ntBASIC5.31□□□□□ -1.56
CHMP3Q9Y3E7 RNU1-20P-201ENST00000363314 162 ntBASIC5.31□□□□□ -1.56
CHMP3Q9Y3E7 RNU4-50P-201ENST00000364361 141 ntBASIC5.31□□□□□ -1.56
CHMP3Q9Y3E7 RNU6-1317P-201ENST00000364582 104 ntBASIC5.31□□□□□ -1.56
CHMP3Q9Y3E7 RNU2-33P-201ENST00000410344 192 ntBASIC5.31□□□□□ -1.56
CHMP3Q9Y3E7 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC5.31□□□□□ -1.56
CHMP3Q9Y3E7 AL590135.1-201ENST00000422215 156 ntBASIC5.31□□□□□ -1.56
CHMP3Q9Y3E7 AC092573.2-201ENST00000434546 243 ntBASIC5.31□□□□□ -1.56
CHMP3Q9Y3E7 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC5.31□□□□□ -1.56
CHMP3Q9Y3E7 RPL26P6-201ENST00000440913 438 ntBASIC5.31□□□□□ -1.56
CHMP3Q9Y3E7 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC5.31□□□□□ -1.56
CHMP3Q9Y3E7 TRBVB-201ENST00000477100 408 ntBASIC5.31□□□□□ -1.56
CHMP3Q9Y3E7 AC098869.1-201ENST00000481627 292 ntBASIC5.31□□□□□ -1.56
CHMP3Q9Y3E7 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC5.31□□□□□ -1.56
CHMP3Q9Y3E7 NDUFB4P9-201ENST00000511646 388 ntBASIC5.31□□□□□ -1.56
CHMP3Q9Y3E7 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC5.31□□□□□ -1.56
CHMP3Q9Y3E7 AC109329.1-201ENST00000518744 317 ntBASIC5.31□□□□□ -1.56
CHMP3Q9Y3E7 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC5.31□□□□□ -1.56
CHMP3Q9Y3E7 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC5.31□□□□□ -1.56
CHMP3Q9Y3E7 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC5.31□□□□□ -1.56
CHMP3Q9Y3E7 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CHMP3Q9Y3E7 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
CHMP3Q9Y3E7 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
CHMP3Q9Y3E7 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 UBE2L2-201ENST00000254302 429 ntBASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 U8.8-201ENST00000365399 135 ntBASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 SNORA36C-201ENST00000384289 132 ntBASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 Y_RNA.471-201ENST00000384312 102 ntBASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 RNU6-933P-201ENST00000384424 107 ntBASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 RNU1-13P-201ENST00000384499 162 ntBASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 Y_RNA.518-201ENST00000384552 113 ntBASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 RNU6-130P-201ENST00000411112 103 ntBASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 AC139712.2-201ENST00000424302 339 ntBASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 HSPD1P21-201ENST00000436541 245 ntBASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 RPL23AP81-201ENST00000455252 467 ntBASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 RPS29P19-201ENST00000479709 171 ntBASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 AL592156.1-201ENST00000508758 304 ntBASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 AC008716.1-201ENST00000511084 513 ntBASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 RPL21P7-201ENST00000557463 483 ntBASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 AMZ2P1-203ENST00000565833 850 ntBASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 RPL23AP97-201ENST00000568955 471 ntBASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 RPL7P50-201ENST00000600588 727 ntBASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 BDH2P1-201ENST00000602288 736 ntBASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 AL390123.1-201ENST00000603216 237 ntBASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 AC073410.2-201ENST00000603240 332 ntBASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 AC010900.2-201ENST00000604508 210 ntBASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 AC098479.1-201ENST00000609225 154 ntBASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 FAM27D1-201ENST00000612308 341 ntBASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 SNX18P1Y-201ENST00000616231 511 ntBASIC5.3□□□□□ -1.56
CHMP3Q9Y3E7 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms