Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 AL512643.1-201ENST00000635735 524 ntBASIC5.15□□□□□ -1.59
CCDC87Q9NVE4 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC87Q9NVE4 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC87Q9NVE4 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC87Q9NVE4 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC87Q9NVE4 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 Y_RNA.151-201ENST00000363566 112 ntBASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 RNA5SP72-201ENST00000364442 117 ntBASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 RNU6-395P-201ENST00000365662 106 ntBASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 Y_RNA.389-201ENST00000383924 113 ntBASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 MIR124-3-201ENST00000384866 87 ntBASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 RNU2-23P-201ENST00000410545 195 ntBASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 HMGB1P12-201ENST00000438594 598 ntBASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 AC108860.1-201ENST00000484521 383 ntBASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 AC011005.2-201ENST00000487324 359 ntBASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 AC017037.1-201ENST00000508460 471 ntBASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 RNU6-1315P-201ENST00000517187 99 ntBASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 AC109446.1-201ENST00000566172 220 ntBASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 AC002545.1-201ENST00000592511 181 ntBASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 AL138721.1-201ENST00000616756 179 ntBASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 RMST_4.1-201ENST00000616886 107 ntBASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 AC140113.4-201ENST00000622087 222 ntBASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 Z99571.1-201ENST00000636677 394 ntBASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC87Q9NVE4 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 LDHAL6CP-202ENST00000550738 3224 ntBASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 Y_RNA.324-201ENST00000365165 102 ntBASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 Y_RNA.574-201ENST00000384766 95 ntBASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 Y_RNA.645-201ENST00000391229 102 ntBASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 AL445529.1-201ENST00000398713 389 ntBASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 LAP3P1-201ENST00000403648 294 ntBASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 RNU2-3P-201ENST00000410144 191 ntBASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 RNU6-101P-201ENST00000410323 104 ntBASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 AC096664.2-201ENST00000411843 406 ntBASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 CYCSP33-201ENST00000414485 327 ntBASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 AL592045.1-201ENST00000429867 352 ntBASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 AL133396.1-201ENST00000432048 687 ntBASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 FTH1P25-201ENST00000447665 469 ntBASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 AL451050.1-201ENST00000450126 415 ntBASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 AC018437.1-201ENST00000492214 406 ntBASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 AP004371.1-201ENST00000525240 214 ntBASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 YPEL5P3-201ENST00000547227 352 ntBASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 AC087499.8-201ENST00000578406 226 ntBASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 AL138825.1-201ENST00000618587 192 ntBASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 AL606534.2-204ENST00000635008 178 ntBASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 MAPK10-372ENST00000641954 3413 ntBASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC87Q9NVE4 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 RNU6-1167P-201ENST00000363227 94 ntBASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 Y_RNA.152-201ENST00000363578 100 ntBASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 Y_RNA.153-201ENST00000363615 91 ntBASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 RNU6-1059P-201ENST00000363752 98 ntBASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 RNA5SP235-201ENST00000365411 114 ntBASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 Y_RNA.380-201ENST00000365663 111 ntBASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 RNU6-1179P-201ENST00000384667 107 ntBASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 MIR514A1-201ENST00000385133 98 ntBASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 MIR634-201ENST00000385208 97 ntBASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 RNU6-907P-201ENST00000390924 102 ntBASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 AL030996.1-201ENST00000411430 235 ntBASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 UBE2Q2P12-201ENST00000414573 204 ntBASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 DPH3P2-201ENST00000422618 250 ntBASIC5.12□□□□□ -1.59
CCDC87Q9NVE4 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms