Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 OR2B8P-201ENST00000432841 938 ntBASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 AC104850.1-201ENST00000435940 476 ntBASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 NEFMP1-201ENST00000443423 1006 ntBASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 AC020550.1-201ENST00000447385 163 ntBASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 AL353705.4-201ENST00000449661 238 ntBASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 MTCO2P29-201ENST00000465212 189 ntBASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 HMGN2P13-201ENST00000476476 274 ntBASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 RN7SKP24-201ENST00000515888 284 ntBASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 RN7SKP298-201ENST00000515950 94 ntBASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 RNU6-711P-201ENST00000517255 106 ntBASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 HMGB1P41-201ENST00000520234 440 ntBASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 ARL2BPP2-201ENST00000550907 489 ntBASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 MTND5P27-201ENST00000428871 1720 ntBASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 AC007785.2-201ENST00000598627 1916 ntBASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.13□□□□□ -1.91
ZNF541Q9H0D2 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.13□□□□□ -1.91
ZNF541Q9H0D2 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.13□□□□□ -1.91
ZNF541Q9H0D2 Y_RNA.359-201ENST00000365498 102 ntBASIC3.13□□□□□ -1.91
ZNF541Q9H0D2 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.13□□□□□ -1.91
ZNF541Q9H0D2 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
ZNF541Q9H0D2 RNU1-101P-201ENST00000391171 127 ntBASIC3.13□□□□□ -1.91
ZNF541Q9H0D2 5S_rRNA.2-201ENST00000391293 112 ntBASIC3.13□□□□□ -1.91
ZNF541Q9H0D2 AL354719.1-201ENST00000406535 843 ntBASIC3.13□□□□□ -1.91
ZNF541Q9H0D2 RPLP0P7-201ENST00000416050 667 ntBASIC3.13□□□□□ -1.91
ZNF541Q9H0D2 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
ZNF541Q9H0D2 HIGD1AP11-201ENST00000438361 280 ntBASIC3.13□□□□□ -1.91
ZNF541Q9H0D2 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
ZNF541Q9H0D2 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.13□□□□□ -1.91
ZNF541Q9H0D2 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC3.13□□□□□ -1.91
ZNF541Q9H0D2 AC006483.1-201ENST00000487308 313 ntBASIC3.13□□□□□ -1.91
ZNF541Q9H0D2 AL160314.1-201ENST00000490836 438 ntBASIC3.13□□□□□ -1.91
ZNF541Q9H0D2 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC3.13□□□□□ -1.91
ZNF541Q9H0D2 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.13□□□□□ -1.91
ZNF541Q9H0D2 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC3.13□□□□□ -1.91
ZNF541Q9H0D2 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.13□□□□□ -1.91
ZNF541Q9H0D2 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC3.13□□□□□ -1.91
ZNF541Q9H0D2 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.13□□□□□ -1.91
ZNF541Q9H0D2 AC091304.9-201ENST00000612091 226 ntBASIC3.13□□□□□ -1.91
ZNF541Q9H0D2 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC3.13□□□□□ -1.91
ZNF541Q9H0D2 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 RNU6-741P-201ENST00000383889 107 ntBASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 MIR181A2-201ENST00000384863 110 ntBASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 MIR27B-201ENST00000385129 97 ntBASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 AL135786.1-201ENST00000415892 214 ntBASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 AC104651.1-201ENST00000427559 735 ntBASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 MTATP6P30-201ENST00000443540 664 ntBASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 FABP5P13-201ENST00000452144 328 ntBASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 RNU6-420P-201ENST00000458780 107 ntBASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 RNU6-143P-201ENST00000516942 93 ntBASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 RNA5SP290-201ENST00000517133 127 ntBASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 AP003392.2-201ENST00000527269 208 ntBASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 AC024909.2-201ENST00000553035 286 ntBASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 MTCYBP33-201ENST00000575007 1130 ntBASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 AC012213.3-201ENST00000577199 777 ntBASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 MIR4528-201ENST00000577763 90 ntBASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 MIR3609-201ENST00000582661 80 ntBASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 MIR4635-201ENST00000583759 79 ntBASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 AC073648.5-201ENST00000603502 305 ntBASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 AC245014.2-201ENST00000603689 287 ntBASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 AC246785.4-201ENST00000605374 287 ntBASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 AC103710.2-201ENST00000609912 942 ntBASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 AC090115.4-201ENST00000609970 188 ntBASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 U4.3-201ENST00000621047 82 ntBASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 LRRC77P-213ENST00000637727 880 ntBASIC3.12□□□□□ -1.91
ZNF541Q9H0D2 AC103988.1-201ENST00000566382 2177 ntBASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 AC010733.2-201ENST00000589496 5702 ntBASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 AL049641.1-201ENST00000441055 1948 ntBASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 AC073343.1-201ENST00000328239 651 ntBASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 RNU6-288P-201ENST00000363690 104 ntBASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 RNU6-641P-201ENST00000384006 107 ntBASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 AC093106.2-201ENST00000428212 385 ntBASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 RPL31P35-201ENST00000431058 377 ntBASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 RPS29P6-201ENST00000438196 145 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 116.1 ms