Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 RNU6-270P-201ENST00000364131 105 ntBASIC1.2□□□□□ -2.22
SCAPERQ9BY12 RNU6-821P-201ENST00000390995 107 ntBASIC1.2□□□□□ -2.22
SCAPERQ9BY12 SSXP10-201ENST00000402595 565 ntBASIC1.2□□□□□ -2.22
SCAPERQ9BY12 RNU6ATAC27P-201ENST00000408289 119 ntBASIC1.2□□□□□ -2.22
SCAPERQ9BY12 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC1.2□□□□□ -2.22
SCAPERQ9BY12 RPL36P19-201ENST00000430744 301 ntBASIC1.2□□□□□ -2.22
SCAPERQ9BY12 RPL7P34-201ENST00000433316 712 ntBASIC1.2□□□□□ -2.22
SCAPERQ9BY12 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC1.2□□□□□ -2.22
SCAPERQ9BY12 RNU6-420P-201ENST00000458780 107 ntBASIC1.2□□□□□ -2.22
SCAPERQ9BY12 snoU109.1-201ENST00000459339 135 ntBASIC1.2□□□□□ -2.22
SCAPERQ9BY12 AC104057.1-201ENST00000515547 497 ntBASIC1.2□□□□□ -2.22
SCAPERQ9BY12 SNORA31.13-201ENST00000516624 135 ntBASIC1.2□□□□□ -2.22
SCAPERQ9BY12 SNORA48.10-201ENST00000516965 160 ntBASIC1.2□□□□□ -2.22
SCAPERQ9BY12 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC1.2□□□□□ -2.22
SCAPERQ9BY12 SNORA22-201ENST00000383907 134 ntBASIC1.19□□□□□ -2.22
SCAPERQ9BY12 SNORA22C-201ENST00000384614 134 ntBASIC1.19□□□□□ -2.22
SCAPERQ9BY12 MIR934-201ENST00000401241 83 ntBASIC1.19□□□□□ -2.22
SCAPERQ9BY12 RNU6-1328P-201ENST00000410938 106 ntBASIC1.19□□□□□ -2.22
SCAPERQ9BY12 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC1.19□□□□□ -2.22
SCAPERQ9BY12 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
SCAPERQ9BY12 GTF2IP20-201ENST00000431663 360 ntBASIC1.19□□□□□ -2.22
SCAPERQ9BY12 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC1.19□□□□□ -2.22
SCAPERQ9BY12 KATNBL1P4-201ENST00000503545 918 ntBASIC1.19□□□□□ -2.22
SCAPERQ9BY12 AC067904.2-201ENST00000517322 1283 ntBASIC1.19□□□□□ -2.22
SCAPERQ9BY12 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC1.19□□□□□ -2.22
SCAPERQ9BY12 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC1.19□□□□□ -2.22
SCAPERQ9BY12 AC010615.3-201ENST00000597319 394 ntBASIC1.19□□□□□ -2.22
SCAPERQ9BY12 AC021646.1-201ENST00000605469 484 ntBASIC1.19□□□□□ -2.22
SCAPERQ9BY12 AC096772.1-201ENST00000609146 564 ntBASIC1.19□□□□□ -2.22
SCAPERQ9BY12 AC010487.4-201ENST00000637027 61 ntBASIC1.19□□□□□ -2.22
SCAPERQ9BY12 MTND5P9-201ENST00000503854 1755 ntBASIC1.18□□□□□ -2.22
SCAPERQ9BY12 SNORD114-2-201ENST00000363953 78 ntBASIC1.18□□□□□ -2.22
SCAPERQ9BY12 MIR508-201ENST00000384857 115 ntBASIC1.18□□□□□ -2.22
SCAPERQ9BY12 AC096920.1-201ENST00000423991 241 ntBASIC1.18□□□□□ -2.22
SCAPERQ9BY12 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC1.18□□□□□ -2.22
SCAPERQ9BY12 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
SCAPERQ9BY12 AC007038.2-201ENST00000608095 740 ntBASIC1.18□□□□□ -2.22
SCAPERQ9BY12 AC090517.3-201ENST00000625170 141 ntBASIC1.18□□□□□ -2.22
SCAPERQ9BY12 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.18□□□□□ -2.22
SCAPERQ9BY12 AC087821.2-201ENST00000637086 450 ntBASIC1.18□□□□□ -2.22
SCAPERQ9BY12 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
SCAPERQ9BY12 OR4G2P-201ENST00000328113 903 ntBASIC1.17□□□□□ -2.22
SCAPERQ9BY12 RNA5SP276-201ENST00000362580 94 ntBASIC1.17□□□□□ -2.22
SCAPERQ9BY12 RNU6-1226P-201ENST00000384317 107 ntBASIC1.17□□□□□ -2.22
SCAPERQ9BY12 RN7SKP158-201ENST00000410453 326 ntBASIC1.17□□□□□ -2.22
SCAPERQ9BY12 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC1.17□□□□□ -2.22
SCAPERQ9BY12 OFD1P12Y-201ENST00000427963 1207 ntBASIC1.17□□□□□ -2.22
SCAPERQ9BY12 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC1.17□□□□□ -2.22
SCAPERQ9BY12 ZNF736P6Y-201ENST00000447526 1213 ntBASIC1.17□□□□□ -2.22
SCAPERQ9BY12 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC1.17□□□□□ -2.22
SCAPERQ9BY12 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC1.17□□□□□ -2.22
SCAPERQ9BY12 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC1.17□□□□□ -2.22
SCAPERQ9BY12 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC1.17□□□□□ -2.22
SCAPERQ9BY12 AC010186.2-204ENST00000537668 439 ntBASIC1.17□□□□□ -2.22
SCAPERQ9BY12 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC1.17□□□□□ -2.22
SCAPERQ9BY12 MIR4711-201ENST00000578274 70 ntBASIC1.17□□□□□ -2.22
SCAPERQ9BY12 AL773524.1-201ENST00000614065 229 ntBASIC1.17□□□□□ -2.22
SCAPERQ9BY12 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC1.16□□□□□ -2.22
SCAPERQ9BY12 CBX3P1-201ENST00000325243 554 ntBASIC1.16□□□□□ -2.22
SCAPERQ9BY12 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.16□□□□□ -2.22
SCAPERQ9BY12 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC1.16□□□□□ -2.22
SCAPERQ9BY12 AC093106.2-201ENST00000428212 385 ntBASIC1.16□□□□□ -2.22
SCAPERQ9BY12 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC1.16□□□□□ -2.22
SCAPERQ9BY12 MTND2P19-201ENST00000449129 1012 ntBASIC1.16□□□□□ -2.22
SCAPERQ9BY12 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC1.16□□□□□ -2.22
SCAPERQ9BY12 RPL30P5-201ENST00000494923 336 ntBASIC1.16□□□□□ -2.22
SCAPERQ9BY12 AC113398.2-201ENST00000507630 558 ntBASIC1.16□□□□□ -2.22
SCAPERQ9BY12 LINC00933-203ENST00000559812 219 ntBASIC1.16□□□□□ -2.22
SCAPERQ9BY12 AC243960.4-201ENST00000600532 288 ntBASIC1.16□□□□□ -2.22
SCAPERQ9BY12 Y_RNA.178-201ENST00000363832 102 ntBASIC1.15□□□□□ -2.22
SCAPERQ9BY12 RNU6-98P-201ENST00000384173 107 ntBASIC1.15□□□□□ -2.22
SCAPERQ9BY12 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC1.15□□□□□ -2.22
SCAPERQ9BY12 RNU6-516P-201ENST00000411381 104 ntBASIC1.15□□□□□ -2.22
SCAPERQ9BY12 CR848007.2-201ENST00000424918 787 ntBASIC1.15□□□□□ -2.22
SCAPERQ9BY12 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC1.15□□□□□ -2.22
SCAPERQ9BY12 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1.15□□□□□ -2.22
SCAPERQ9BY12 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.15□□□□□ -2.22
SCAPERQ9BY12 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC1.15□□□□□ -2.22
SCAPERQ9BY12 MIR6835-201ENST00000621552 64 ntBASIC1.15□□□□□ -2.22
SCAPERQ9BY12 AC016716.1-201ENST00000265882 708 ntBASIC1.15□□□□□ -2.23
SCAPERQ9BY12 RNU6-1035P-201ENST00000384477 107 ntBASIC1.15□□□□□ -2.23
SCAPERQ9BY12 AL109913.1-201ENST00000421173 514 ntBASIC1.15□□□□□ -2.23
SCAPERQ9BY12 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC1.15□□□□□ -2.23
SCAPERQ9BY12 HMGN1P33-201ENST00000432945 451 ntBASIC1.15□□□□□ -2.23
SCAPERQ9BY12 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC1.15□□□□□ -2.23
SCAPERQ9BY12 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.15□□□□□ -2.23
SCAPERQ9BY12 RPL39P29-201ENST00000447779 157 ntBASIC1.15□□□□□ -2.23
SCAPERQ9BY12 AL589880.1-201ENST00000448271 287 ntBASIC1.15□□□□□ -2.23
SCAPERQ9BY12 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC1.15□□□□□ -2.23
SCAPERQ9BY12 SNORA48.11-201ENST00000517015 89 ntBASIC1.15□□□□□ -2.23
SCAPERQ9BY12 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1.15□□□□□ -2.23
SCAPERQ9BY12 AC090116.1-201ENST00000615679 446 ntBASIC1.15□□□□□ -2.23
SCAPERQ9BY12 SUCLA2P2-201ENST00000417269 1309 ntBASIC1.15□□□□□ -2.23
SCAPERQ9BY12 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.14□□□□□ -2.23
SCAPERQ9BY12 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
SCAPERQ9BY12 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.14□□□□□ -2.23
SCAPERQ9BY12 Y_RNA.251-201ENST00000364551 99 ntBASIC1.14□□□□□ -2.23
SCAPERQ9BY12 RNU6-1235P-201ENST00000384559 107 ntBASIC1.14□□□□□ -2.23
SCAPERQ9BY12 AL158823.1-201ENST00000418441 478 ntBASIC1.14□□□□□ -2.23
SCAPERQ9BY12 AC244636.1-201ENST00000421152 228 ntBASIC1.14□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms