Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 SNORD116-20-201ENST00000384529 92 ntBASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 RNA5SP252-201ENST00000391131 119 ntBASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 MAP1LC3BP1-201ENST00000417653 379 ntBASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 RPL23AP25-201ENST00000430973 463 ntBASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 RPL36AP39-201ENST00000445859 318 ntBASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 AC012308.1-201ENST00000451232 178 ntBASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 MRPL42P6-201ENST00000486397 371 ntBASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 SCARNA16.2-201ENST00000516520 172 ntBASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 SNORD19.2-201ENST00000516978 73 ntBASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 SNORA31.18-201ENST00000517043 134 ntBASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 RNU6-264P-201ENST00000517134 104 ntBASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 MIR3171-201ENST00000584270 74 ntBASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 AC024220.1-201ENST00000603675 484 ntBASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 SNRPGP17-201ENST00000603780 214 ntBASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 AL021997.2-201ENST00000615674 271 ntBASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 AC019206.1-201ENST00000621938 425 ntBASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 AC132068.1-201ENST00000623805 459 ntBASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 RNU6-227P-201ENST00000362865 103 ntBASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 Y_RNA.112-201ENST00000363250 102 ntBASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 RN7SKP15-201ENST00000364742 309 ntBASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 RNU6-474P-201ENST00000384243 107 ntBASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 FTH1P15-201ENST00000406984 280 ntBASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 MIR1182-201ENST00000408363 97 ntBASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 EIF4EP2-201ENST00000422816 654 ntBASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 AL136097.1-201ENST00000456945 913 ntBASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 AC034236.1-201ENST00000469891 373 ntBASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 RN7SL585P-201ENST00000470538 280 ntBASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 RPL7P51-201ENST00000490532 749 ntBASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 RPL7P47-201ENST00000497299 556 ntBASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 RNU6-581P-201ENST00000516214 105 ntBASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 SNORA31.21-201ENST00000517180 77 ntBASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 HMGB1P40-201ENST00000525121 540 ntBASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 AC027544.3-201ENST00000535082 757 ntBASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 HCG18-243ENST00000602498 327 ntTSL 3 BASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 MIR3529-201ENST00000637713 78 ntBASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 HAUS6P2-201ENST00000433254 2404 ntBASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 AC004944.1-201ENST00000517807 3059 ntBASIC3.62□□□□□ -1.83
CLRN3Q8NCR9 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 Y_RNA.202-201ENST00000364083 110 ntBASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 RNU6-331P-201ENST00000384724 107 ntBASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 MIR323B-201ENST00000385269 82 ntBASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 AL161651.1-201ENST00000440882 223 ntBASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 AC011816.1-201ENST00000441346 546 ntBASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms