Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC3.33□□□□□ -1.88
HOXA4Q00056 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXA4Q00056 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC3.33□□□□□ -1.88
HOXA4Q00056 AP002826.1-201ENST00000608835 315 ntBASIC3.33□□□□□ -1.88
HOXA4Q00056 AL161423.1-201ENST00000613700 262 ntBASIC3.33□□□□□ -1.88
HOXA4Q00056 AC133104.2-201ENST00000615272 193 ntBASIC3.33□□□□□ -1.88
HOXA4Q00056 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HOXA4Q00056 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXA4Q00056 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXA4Q00056 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HOXA4Q00056 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC3.33□□□□□ -1.88
HOXA4Q00056 MTND5P30-201ENST00000452896 1731 ntBASIC3.33□□□□□ -1.88
HOXA4Q00056 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXA4Q00056 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXA4Q00056 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC3.32□□□□□ -1.88
HOXA4Q00056 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
HOXA4Q00056 Y_RNA.151-201ENST00000363566 112 ntBASIC3.32□□□□□ -1.88
HOXA4Q00056 RNU6-1040P-201ENST00000383974 107 ntBASIC3.32□□□□□ -1.88
HOXA4Q00056 RNU6-639P-201ENST00000384074 107 ntBASIC3.32□□□□□ -1.88
HOXA4Q00056 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXA4Q00056 CYP4F29P-201ENST00000420685 446 ntBASIC3.32□□□□□ -1.88
HOXA4Q00056 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXA4Q00056 AL158156.1-201ENST00000422509 473 ntBASIC3.32□□□□□ -1.88
HOXA4Q00056 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXA4Q00056 AC007919.1-201ENST00000429380 217 ntBASIC3.32□□□□□ -1.88
HOXA4Q00056 AL160004.2-201ENST00000432935 350 ntBASIC3.32□□□□□ -1.88
HOXA4Q00056 AL645568.3-201ENST00000433683 316 ntBASIC3.32□□□□□ -1.88
HOXA4Q00056 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXA4Q00056 AL353748.1-201ENST00000440753 474 ntBASIC3.32□□□□□ -1.88
HOXA4Q00056 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXA4Q00056 RPL21P23-201ENST00000446654 460 ntBASIC3.32□□□□□ -1.88
HOXA4Q00056 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXA4Q00056 FABP5P15-201ENST00000453566 214 ntBASIC3.32□□□□□ -1.88
HOXA4Q00056 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXA4Q00056 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXA4Q00056 AC069113.1-201ENST00000517763 267 ntBASIC3.32□□□□□ -1.88
HOXA4Q00056 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.32□□□□□ -1.88
HOXA4Q00056 RNU6-988P-201ENST00000519081 107 ntBASIC3.32□□□□□ -1.88
HOXA4Q00056 GNRHR2P1-201ENST00000555315 631 ntBASIC3.32□□□□□ -1.88
HOXA4Q00056 AL157871.3-201ENST00000557231 293 ntBASIC3.32□□□□□ -1.88
HOXA4Q00056 AC106900.2-201ENST00000604994 317 ntBASIC3.32□□□□□ -1.88
HOXA4Q00056 MIR6798-201ENST00000612887 67 ntBASIC3.32□□□□□ -1.88
HOXA4Q00056 AC005344.1-201ENST00000613391 459 ntBASIC3.32□□□□□ -1.88
HOXA4Q00056 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXA4Q00056 MTND4P1-201ENST00000457501 1466 ntBASIC3.32□□□□□ -1.88
HOXA4Q00056 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXA4Q00056 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.32□□□□□ -1.88
HOXA4Q00056 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXA4Q00056 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXA4Q00056 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
HOXA4Q00056 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HOXA4Q00056 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.32□□□□□ -1.88
HOXA4Q00056 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HOXA4Q00056 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
HOXA4Q00056 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HOXA4Q00056 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.31□□□□□ -1.88
HOXA4Q00056 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HOXA4Q00056 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
HOXA4Q00056 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
HOXA4Q00056 SNORA60-201ENST00000362396 134 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 RNU6-1115P-201ENST00000362490 106 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 Y_RNA.33-201ENST00000362591 102 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 Y_RNA.126-201ENST00000363382 111 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 Y_RNA.145-201ENST00000363527 102 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 Y_RNA.148-201ENST00000363557 117 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
HOXA4Q00056 Y_RNA.459-201ENST00000384251 102 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 SNORA3C-201ENST00000408792 125 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 RNU6-1025P-201ENST00000410629 104 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 RNU6-628P-201ENST00000410675 107 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXA4Q00056 UBE2V1P4-201ENST00000425374 344 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXA4Q00056 AL035666.1-201ENST00000446195 348 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.31□□□□□ -1.88
HOXA4Q00056 FTH1P25-201ENST00000447665 469 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 NDUFS5P3-201ENST00000450668 321 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 CECR9-201ENST00000453421 199 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 SNORD5.1-201ENST00000458800 75 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 AL160314.1-201ENST00000490836 438 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.31□□□□□ -1.88
HOXA4Q00056 PTP4A1P4-201ENST00000512479 322 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 RNU6-976P-201ENST00000516086 111 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 RNA5SP208-201ENST00000516156 78 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 RNU6-1046P-201ENST00000516538 107 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 RNA5SP384-201ENST00000516615 116 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 RN7SKP295-201ENST00000517264 153 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 AP003122.3-201ENST00000526316 255 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 AC084851.1-201ENST00000529105 249 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC3.31□□□□□ -1.88
HOXA4Q00056 OR8R1P-201ENST00000543943 764 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 OR1M4P-201ENST00000589199 287 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC3.31□□□□□ -1.88
HOXA4Q00056 AC011494.1-201ENST00000596454 237 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 VN1R85P-201ENST00000601587 426 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 AL606490.9-201ENST00000603331 271 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 AC136443.5-201ENST00000603741 370 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 AC007938.3-201ENST00000604965 623 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 AL591424.2-201ENST00000617023 128 ntBASIC3.31□□□□□ -1.88
HOXA4Q00056 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms