Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC245047.4-201ENST00000433189 144 ntBASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 HMGN2P32-201ENST00000444648 269 ntBASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 ABCC13-202ENST00000463099 3842 ntBASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 RPS23P6-201ENST00000466136 431 ntBASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 UBE2CP3-201ENST00000502715 450 ntBASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 RNU2-12P-201ENST00000517216 168 ntBASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 FAM91A3P-201ENST00000456826 2544 ntBASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
VPS9D1Q9Y2B5 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
VPS9D1Q9Y2B5 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.53□□□□□ -1.52
VPS9D1Q9Y2B5 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.53□□□□□ -1.52
VPS9D1Q9Y2B5 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
VPS9D1Q9Y2B5 RNU6-793P-201ENST00000384233 104 ntBASIC5.53□□□□□ -1.52
VPS9D1Q9Y2B5 SNORD56.6-201ENST00000384569 71 ntBASIC5.53□□□□□ -1.52
VPS9D1Q9Y2B5 Y_RNA.617-201ENST00000410920 90 ntBASIC5.53□□□□□ -1.52
VPS9D1Q9Y2B5 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC5.53□□□□□ -1.52
VPS9D1Q9Y2B5 MLLT10P1-201ENST00000418346 262 ntBASIC5.53□□□□□ -1.52
VPS9D1Q9Y2B5 AC007161.1-204ENST00000423039 460 ntBASIC5.53□□□□□ -1.52
VPS9D1Q9Y2B5 GPM6BP3-201ENST00000442797 145 ntBASIC5.53□□□□□ -1.52
VPS9D1Q9Y2B5 PPIAP20-201ENST00000449839 135 ntBASIC5.53□□□□□ -1.52
VPS9D1Q9Y2B5 IGHV5-78-201ENST00000450948 295 ntBASIC5.53□□□□□ -1.52
VPS9D1Q9Y2B5 AZGP1P2-201ENST00000454506 345 ntBASIC5.53□□□□□ -1.52
VPS9D1Q9Y2B5 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC5.53□□□□□ -1.52
VPS9D1Q9Y2B5 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.53□□□□□ -1.52
VPS9D1Q9Y2B5 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC5.53□□□□□ -1.52
VPS9D1Q9Y2B5 MIR3614-201ENST00000581261 86 ntBASIC5.53□□□□□ -1.52
VPS9D1Q9Y2B5 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC5.53□□□□□ -1.52
VPS9D1Q9Y2B5 AC120024.3-201ENST00000603167 156 ntBASIC5.53□□□□□ -1.52
VPS9D1Q9Y2B5 AC116447.1-201ENST00000613153 453 ntBASIC5.53□□□□□ -1.52
VPS9D1Q9Y2B5 AC025574.2-201ENST00000615621 514 ntBASIC5.53□□□□□ -1.52
VPS9D1Q9Y2B5 AC099669.2-201ENST00000616549 437 ntBASIC5.53□□□□□ -1.52
VPS9D1Q9Y2B5 MESTIT1_1.1-201ENST00000618871 140 ntBASIC5.53□□□□□ -1.52
VPS9D1Q9Y2B5 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
VPS9D1Q9Y2B5 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
VPS9D1Q9Y2B5 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
VPS9D1Q9Y2B5 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.53□□□□□ -1.52
VPS9D1Q9Y2B5 AL031595.2-201ENST00000624215 19071 ntBASIC5.53□□□□□ -1.52
VPS9D1Q9Y2B5 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.53□□□□□ -1.52
VPS9D1Q9Y2B5 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 AC010266.2-201ENST00000564741 3255 ntBASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 RNU6-1205P-201ENST00000363625 106 ntBASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 RNU6-647P-201ENST00000364243 107 ntBASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 SNORA70.6-201ENST00000383934 134 ntBASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 AC004386.2-201ENST00000441858 148 ntBASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 AC090602.1-201ENST00000469695 252 ntBASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 AC021006.3-201ENST00000530771 192 ntBASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 AC105254.2-201ENST00000603636 436 ntBASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 AC144833.1-201ENST00000567953 4089 ntBASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 AC005005.4-201ENST00000623789 16698 ntBASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
VPS9D1Q9Y2B5 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.51□□□□□ -1.53
VPS9D1Q9Y2B5 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
VPS9D1Q9Y2B5 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
VPS9D1Q9Y2B5 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
VPS9D1Q9Y2B5 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.51□□□□□ -1.53
VPS9D1Q9Y2B5 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
VPS9D1Q9Y2B5 RN7SKP145-201ENST00000363291 303 ntBASIC5.51□□□□□ -1.53
VPS9D1Q9Y2B5 MIR514A1-201ENST00000385133 98 ntBASIC5.51□□□□□ -1.53
VPS9D1Q9Y2B5 U6atac.2-201ENST00000408644 118 ntBASIC5.51□□□□□ -1.53
VPS9D1Q9Y2B5 RPS26P45-201ENST00000471748 340 ntBASIC5.51□□□□□ -1.53
VPS9D1Q9Y2B5 RN7SKP12-201ENST00000516275 143 ntBASIC5.51□□□□□ -1.53
VPS9D1Q9Y2B5 SNORA40.13-201ENST00000516379 120 ntBASIC5.51□□□□□ -1.53
VPS9D1Q9Y2B5 RNA5SP290-201ENST00000517133 127 ntBASIC5.51□□□□□ -1.53
VPS9D1Q9Y2B5 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC5.51□□□□□ -1.53
VPS9D1Q9Y2B5 MIR4724-201ENST00000579485 89 ntBASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms