Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 AC004925.1-201ENST00000624256 2706 ntBASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 DEFB108F-201ENST00000344638 222 ntBASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 RNU4-44P-201ENST00000363050 141 ntBASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 SNORA5A-201ENST00000384111 134 ntBASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 SNORD96B-201ENST00000386148 79 ntBASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 MAP1LC3BP1-201ENST00000417653 379 ntBASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 HMGB1P9-201ENST00000429856 646 ntBASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 CEP57L1P1-201ENST00000430943 1201 ntBASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 RNU7-187P-201ENST00000458985 68 ntBASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 RN7SL323P-201ENST00000494712 295 ntBASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 MTND3P25-201ENST00000509243 135 ntBASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 AC022968.1-201ENST00000567372 442 ntBASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 AC113195.1-201ENST00000579952 141 ntBASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 AL591516.1-201ENST00000611326 274 ntBASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 AC066616.2-201ENST00000559334 1481 ntBASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 AC000123.3-201ENST00000624029 4975 ntBASIC5.17□□□□□ -1.58
CCDC87Q9NVE4 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 Z73965.1-201ENST00000623412 2297 ntBASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 AP001273.1-201ENST00000624493 3152 ntBASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 UBE2L2-201ENST00000254302 429 ntBASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 U8.11-201ENST00000384699 133 ntBASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 U8.12-201ENST00000384701 133 ntBASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 PTMAP5-201ENST00000393073 333 ntBASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 UBE2D3P2-201ENST00000424409 445 ntBASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 DAP3P1-201ENST00000441522 278 ntBASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 U8.18-201ENST00000459285 133 ntBASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 AC008571.1-201ENST00000467232 300 ntBASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 AC022795.1-201ENST00000473808 480 ntBASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 RPL29P14-201ENST00000495837 428 ntBASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 MLLT10P2-201ENST00000506434 249 ntBASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 RN7SKP46-201ENST00000515942 234 ntBASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 CYCSP30-201ENST00000546447 172 ntBASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 AC025627.2-201ENST00000576220 160 ntBASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 MIR1273C-201ENST00000578669 77 ntBASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 AC092447.9-201ENST00000603395 144 ntBASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 HMGN2P28-201ENST00000606102 262 ntBASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC5.16□□□□□ -1.58
CCDC87Q9NVE4 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
CCDC87Q9NVE4 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC5.15□□□□□ -1.58
CCDC87Q9NVE4 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC5.15□□□□□ -1.58
CCDC87Q9NVE4 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
CCDC87Q9NVE4 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
CCDC87Q9NVE4 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC5.15□□□□□ -1.58
CCDC87Q9NVE4 Y_RNA.39-201ENST00000362620 98 ntBASIC5.15□□□□□ -1.59
CCDC87Q9NVE4 RNU6-842P-201ENST00000384269 107 ntBASIC5.15□□□□□ -1.59
CCDC87Q9NVE4 Y_RNA.556-201ENST00000384677 113 ntBASIC5.15□□□□□ -1.59
CCDC87Q9NVE4 SYF2P2-201ENST00000417620 583 ntBASIC5.15□□□□□ -1.59
CCDC87Q9NVE4 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC5.15□□□□□ -1.59
CCDC87Q9NVE4 AC243428.1-201ENST00000421099 264 ntBASIC5.15□□□□□ -1.59
CCDC87Q9NVE4 AC244098.2-201ENST00000422068 99 ntBASIC5.15□□□□□ -1.59
CCDC87Q9NVE4 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC5.15□□□□□ -1.59
CCDC87Q9NVE4 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC5.15□□□□□ -1.59
CCDC87Q9NVE4 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC5.15□□□□□ -1.59
CCDC87Q9NVE4 HSPD1P21-201ENST00000436541 245 ntBASIC5.15□□□□□ -1.59
CCDC87Q9NVE4 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC5.15□□□□□ -1.59
CCDC87Q9NVE4 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC5.15□□□□□ -1.59
CCDC87Q9NVE4 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC5.15□□□□□ -1.59
CCDC87Q9NVE4 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC5.15□□□□□ -1.59
CCDC87Q9NVE4 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC5.15□□□□□ -1.59
CCDC87Q9NVE4 FAM60BP-201ENST00000578364 658 ntBASIC5.15□□□□□ -1.59
CCDC87Q9NVE4 AC104695.3-201ENST00000604052 296 ntBASIC5.15□□□□□ -1.59
CCDC87Q9NVE4 MPP6-209ENST00000625307 126 ntTSL 5 BASIC5.15□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms