Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
PCDH9Q9HC56 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
PCDH9Q9HC56 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.19□□□□□ -1.9
PCDH9Q9HC56 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
PCDH9Q9HC56 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.19□□□□□ -1.9
PCDH9Q9HC56 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.19□□□□□ -1.9
PCDH9Q9HC56 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
PCDH9Q9HC56 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.18□□□□□ -1.9
PCDH9Q9HC56 AC103988.1-201ENST00000566382 2177 ntBASIC3.18□□□□□ -1.9
PCDH9Q9HC56 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.18□□□□□ -1.9
PCDH9Q9HC56 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC3.18□□□□□ -1.9
PCDH9Q9HC56 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.18□□□□□ -1.9
PCDH9Q9HC56 DEFB108F-201ENST00000344638 222 ntBASIC3.18□□□□□ -1.9
PCDH9Q9HC56 Y_RNA.89-201ENST00000363031 102 ntBASIC3.18□□□□□ -1.9
PCDH9Q9HC56 RNU6-179P-201ENST00000363350 107 ntBASIC3.18□□□□□ -1.9
PCDH9Q9HC56 RNU6-960P-201ENST00000364056 120 ntBASIC3.18□□□□□ -1.9
PCDH9Q9HC56 SNORA38.1-201ENST00000364172 131 ntBASIC3.18□□□□□ -1.9
PCDH9Q9HC56 RNU6-1283P-201ENST00000365314 105 ntBASIC3.18□□□□□ -1.9
PCDH9Q9HC56 RNU4-48P-201ENST00000365559 182 ntBASIC3.18□□□□□ -1.9
PCDH9Q9HC56 SMIM11P1-201ENST00000369586 178 ntBASIC3.18□□□□□ -1.9
PCDH9Q9HC56 RNU6-946P-201ENST00000383878 107 ntBASIC3.18□□□□□ -1.9
PCDH9Q9HC56 SNORA69-201ENST00000383895 132 ntBASIC3.18□□□□□ -1.9
PCDH9Q9HC56 OR51A5P-201ENST00000415429 942 ntBASIC3.18□□□□□ -1.9
PCDH9Q9HC56 MTND4LP11-201ENST00000422184 280 ntBASIC3.18□□□□□ -1.9
PCDH9Q9HC56 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC3.18□□□□□ -1.9
PCDH9Q9HC56 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC3.18□□□□□ -1.9
PCDH9Q9HC56 GTF2IP20-201ENST00000431663 360 ntBASIC3.18□□□□□ -1.9
PCDH9Q9HC56 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.18□□□□□ -1.9
PCDH9Q9HC56 RBMX2P4-201ENST00000441256 376 ntBASIC3.18□□□□□ -1.9
PCDH9Q9HC56 NEFMP1-201ENST00000443423 1006 ntBASIC3.18□□□□□ -1.9
PCDH9Q9HC56 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC3.18□□□□□ -1.9
PCDH9Q9HC56 BX510359.1-201ENST00000456973 237 ntBASIC3.18□□□□□ -1.9
PCDH9Q9HC56 AC233702.1-201ENST00000482905 502 ntBASIC3.18□□□□□ -1.9
PCDH9Q9HC56 RPL36AP51-201ENST00000487216 318 ntBASIC3.18□□□□□ -1.9
PCDH9Q9HC56 RN7SL283P-201ENST00000489055 303 ntBASIC3.18□□□□□ -1.9
PCDH9Q9HC56 MTAPP1-201ENST00000489154 819 ntBASIC3.18□□□□□ -1.9
PCDH9Q9HC56 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC3.18□□□□□ -1.9
PCDH9Q9HC56 RNA5SP401-201ENST00000515920 127 ntBASIC3.18□□□□□ -1.9
PCDH9Q9HC56 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC3.18□□□□□ -1.9
PCDH9Q9HC56 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.18□□□□□ -1.9
PCDH9Q9HC56 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.18□□□□□ -1.9
PCDH9Q9HC56 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC3.18□□□□□ -1.9
PCDH9Q9HC56 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.18□□□□□ -1.9
PCDH9Q9HC56 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC3.18□□□□□ -1.9
PCDH9Q9HC56 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.18□□□□□ -1.9
PCDH9Q9HC56 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.18□□□□□ -1.9
PCDH9Q9HC56 AL162413.1-201ENST00000603198 110 ntBASIC3.18□□□□□ -1.9
PCDH9Q9HC56 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC3.18□□□□□ -1.9
PCDH9Q9HC56 AC018692.3-201ENST00000623929 123 ntBASIC3.18□□□□□ -1.9
PCDH9Q9HC56 AC005609.4-201ENST00000625071 447 ntBASIC3.18□□□□□ -1.9
PCDH9Q9HC56 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC3.18□□□□□ -1.9
PCDH9Q9HC56 U6.114-201ENST00000636407 96 ntBASIC3.18□□□□□ -1.9
PCDH9Q9HC56 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
PCDH9Q9HC56 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
PCDH9Q9HC56 AC008264.2-201ENST00000610193 3731 ntBASIC3.18□□□□□ -1.9
PCDH9Q9HC56 AC093536.2-201ENST00000565257 1406 ntBASIC3.18□□□□□ -1.9
PCDH9Q9HC56 AC004520.1-201ENST00000608362 1413 ntBASIC3.18□□□□□ -1.9
PCDH9Q9HC56 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.17□□□□□ -1.9
PCDH9Q9HC56 RNU6-288P-201ENST00000363690 104 ntBASIC3.17□□□□□ -1.9
PCDH9Q9HC56 RNU6-877P-201ENST00000383868 107 ntBASIC3.17□□□□□ -1.9
PCDH9Q9HC56 SNORA24.1-201ENST00000384401 135 ntBASIC3.17□□□□□ -1.9
PCDH9Q9HC56 MIR454-201ENST00000390180 115 ntBASIC3.17□□□□□ -1.9
PCDH9Q9HC56 RNA5SP274-201ENST00000410484 108 ntBASIC3.17□□□□□ -1.9
PCDH9Q9HC56 MTCYBP8-201ENST00000422855 651 ntBASIC3.17□□□□□ -1.9
PCDH9Q9HC56 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3.17□□□□□ -1.9
PCDH9Q9HC56 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC3.17□□□□□ -1.9
PCDH9Q9HC56 AC016691.1-201ENST00000441321 413 ntBASIC3.17□□□□□ -1.9
PCDH9Q9HC56 MTCO2P3-201ENST00000442543 421 ntBASIC3.17□□□□□ -1.9
PCDH9Q9HC56 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC3.17□□□□□ -1.9
PCDH9Q9HC56 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.17□□□□□ -1.9
PCDH9Q9HC56 RPS20P20-201ENST00000460498 340 ntBASIC3.17□□□□□ -1.9
PCDH9Q9HC56 MRPS17P3-201ENST00000465453 385 ntBASIC3.17□□□□□ -1.9
PCDH9Q9HC56 RPL31P60-201ENST00000478450 367 ntBASIC3.17□□□□□ -1.9
PCDH9Q9HC56 RN7SL20P-201ENST00000488827 297 ntBASIC3.17□□□□□ -1.9
PCDH9Q9HC56 RN7SL504P-201ENST00000494496 287 ntBASIC3.17□□□□□ -1.9
PCDH9Q9HC56 AC069439.1-201ENST00000494739 167 ntBASIC3.17□□□□□ -1.9
PCDH9Q9HC56 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.17□□□□□ -1.9
PCDH9Q9HC56 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC3.17□□□□□ -1.9
PCDH9Q9HC56 AP006587.4-201ENST00000526053 529 ntBASIC3.17□□□□□ -1.9
PCDH9Q9HC56 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC3.17□□□□□ -1.9
PCDH9Q9HC56 OR5B19P-201ENST00000531766 928 ntBASIC3.17□□□□□ -1.9
PCDH9Q9HC56 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.17□□□□□ -1.9
PCDH9Q9HC56 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.17□□□□□ -1.9
PCDH9Q9HC56 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC3.17□□□□□ -1.9
PCDH9Q9HC56 AC074050.1-201ENST00000563247 211 ntBASIC3.17□□□□□ -1.9
PCDH9Q9HC56 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC3.17□□□□□ -1.9
PCDH9Q9HC56 AL158032.1-201ENST00000605401 106 ntBASIC3.17□□□□□ -1.9
PCDH9Q9HC56 AC007619.2-201ENST00000605743 379 ntBASIC3.17□□□□□ -1.9
PCDH9Q9HC56 AC104458.1-201ENST00000608243 463 ntBASIC3.17□□□□□ -1.9
PCDH9Q9HC56 AP002826.1-201ENST00000608835 315 ntBASIC3.17□□□□□ -1.9
PCDH9Q9HC56 AC096577.2-201ENST00000611455 153 ntBASIC3.17□□□□□ -1.9
PCDH9Q9HC56 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC3.17□□□□□ -1.9
PCDH9Q9HC56 AC025034.2-201ENST00000623264 286 ntBASIC3.17□□□□□ -1.9
PCDH9Q9HC56 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC3.17□□□□□ -1.9
PCDH9Q9HC56 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.17□□□□□ -1.9
PCDH9Q9HC56 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
PCDH9Q9HC56 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.16□□□□□ -1.9
PCDH9Q9HC56 FAM35CP-201ENST00000554755 2470 ntBASIC3.16□□□□□ -1.9
PCDH9Q9HC56 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.16□□□□□ -1.9
PCDH9Q9HC56 MIR208A-201ENST00000362287 71 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms