Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 RMST_3.1-201ENST00000611651 109 ntBASIC3.51□□□□□ -1.85
PAAF1Q9BRP4 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC3.51□□□□□ -1.85
PAAF1Q9BRP4 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC3.51□□□□□ -1.85
PAAF1Q9BRP4 uc_338.34-201ENST00000617467 174 ntBASIC3.51□□□□□ -1.85
PAAF1Q9BRP4 AL512643.1-201ENST00000635735 524 ntBASIC3.51□□□□□ -1.85
PAAF1Q9BRP4 AL353743.1-202ENST00000431724 1695 ntBASIC3.51□□□□□ -1.85
PAAF1Q9BRP4 CEP170P1-201ENST00000502249 4587 ntBASIC3.51□□□□□ -1.85
PAAF1Q9BRP4 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
PAAF1Q9BRP4 FAM35DP-201ENST00000323387 2712 ntBASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 Y_RNA.390-201ENST00000383932 102 ntBASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 MIR325-201ENST00000385260 98 ntBASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 RNU6-193P-201ENST00000410977 107 ntBASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 AC096664.2-201ENST00000411843 406 ntBASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 Z85995.1-201ENST00000415547 335 ntBASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 AL356968.1-201ENST00000416622 474 ntBASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 AL592045.1-201ENST00000429867 352 ntBASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 AL158071.1-201ENST00000430315 461 ntBASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 NDUFB4P6-201ENST00000436819 366 ntBASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 RPL21P99-201ENST00000480369 423 ntBASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 AC018710.1-201ENST00000506509 158 ntBASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 AC098591.2-201ENST00000510152 315 ntBASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 RNU6-914P-201ENST00000516749 109 ntBASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 RNU6-685P-201ENST00000517088 95 ntBASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 AC118273.2-201ENST00000532092 465 ntBASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 MDM2-233ENST00000545204 398 ntTSL 5 BASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 SYF2P1-201ENST00000550658 413 ntBASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 MIR4325-201ENST00000583049 90 ntBASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 MIR15A-201ENST00000607334 83 ntBASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 AL390240.1-201ENST00000612950 384 ntBASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 AC007785.2-201ENST00000598627 1916 ntBASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
PAAF1Q9BRP4 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 Y_RNA.88-201ENST00000363029 99 ntBASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 Y_RNA.160-201ENST00000363677 92 ntBASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 MT-TL1-201ENST00000386347 75 ntBASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 U3.42-201ENST00000408746 214 ntBASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 RNU4-47P-201ENST00000410876 114 ntBASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 RPL30P16-201ENST00000419341 429 ntBASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 AL353678.1-201ENST00000422735 741 ntBASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 GPM6BP2-201ENST00000432046 144 ntBASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 AL353705.1-201ENST00000433468 480 ntBASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 AL121601.2-201ENST00000438019 707 ntBASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 GPM6BP1-201ENST00000446387 144 ntBASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 AC109925.1-201ENST00000478069 331 ntBASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 RPS29P25-201ENST00000481709 171 ntBASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 HMGB3P15-201ENST00000507326 574 ntBASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 MIR2276-201ENST00000516886 89 ntBASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 AL137161.1-201ENST00000532231 390 ntBASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 AL121579.1-201ENST00000555129 305 ntBASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 MIR2682-201ENST00000580305 110 ntBASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 BNIP3P10-201ENST00000605360 577 ntBASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 RNVU1-4-201ENST00000612985 164 ntBASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 AL110115.1-201ENST00000614396 364 ntBASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 AL008636.1-201ENST00000625038 1018 ntBASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 AC244205.2-202ENST00000635781 342 ntBASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 MTND1P37-201ENST00000636562 264 ntBASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 Z99571.1-201ENST00000636677 394 ntBASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 AC100810.6-201ENST00000638068 285 ntBASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 FAM35BP-202ENST00000497389 3337 ntBASIC3.49□□□□□ -1.85
PAAF1Q9BRP4 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.48□□□□□ -1.85
PAAF1Q9BRP4 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.48□□□□□ -1.85
PAAF1Q9BRP4 AL139276.1-201ENST00000311910 1001 ntBASIC3.48□□□□□ -1.85
PAAF1Q9BRP4 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
PAAF1Q9BRP4 RNY3P14-201ENST00000384309 102 ntBASIC3.48□□□□□ -1.85
PAAF1Q9BRP4 MIR301A-201ENST00000385261 86 ntBASIC3.48□□□□□ -1.85
PAAF1Q9BRP4 RNU6-332P-201ENST00000391193 108 ntBASIC3.48□□□□□ -1.85
PAAF1Q9BRP4 FGF7P8-201ENST00000402994 292 ntBASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms