Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RNU2-66P-201ENST00000410650 161 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 BX295541.1-201ENST00000417774 250 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 AL645937.1-202ENST00000421799 937 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 USP9YP14-201ENST00000430663 563 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 RPL31P35-201ENST00000431058 377 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 OR2B8P-201ENST00000432841 938 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 AL512844.2-201ENST00000433990 593 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 GPR143P-201ENST00000434155 205 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 NEFMP1-201ENST00000443423 1006 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 AC022364.2-201ENST00000457963 554 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 AC126389.1-201ENST00000477436 290 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 HMGB1P29-201ENST00000505659 499 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 HIGD1AP13-201ENST00000509878 289 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 Y_RNA.655-201ENST00000515919 96 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 RN7SKP282-201ENST00000516824 299 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 RNU6-410P-201ENST00000517006 107 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 HMGB1P41-201ENST00000520234 440 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 AC068657.1-201ENST00000520807 306 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 AC245166.1-201ENST00000521012 253 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 MIR3162-201ENST00000581818 82 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 AC091805.2-201ENST00000603848 235 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 AC136601.2-201ENST00000604356 474 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 AC007363.1-201ENST00000604736 620 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 MIR98-201ENST00000606724 119 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 AC087241.4-201ENST00000612441 480 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 AC139792.2-201ENST00000624218 587 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 MTND5P42-201ENST00000637720 498 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 OR5H6-203ENST00000642105 978 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 MTND5P7-201ENST00000413558 1798 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 AC092435.3-201ENST00000565538 3654 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 MTND5P29-201ENST00000458676 1807 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 MTND5P17-201ENST00000418405 1603 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 MIR449A-201ENST00000362113 91 ntBASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 RNU6-181P-201ENST00000363225 107 ntBASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 RNU6-1167P-201ENST00000363227 94 ntBASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 RNU6-39P-201ENST00000384344 107 ntBASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 RNU2-39P-201ENST00000410604 198 ntBASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 RNU6-195P-201ENST00000411352 109 ntBASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 ELOCP14-201ENST00000428070 331 ntBASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 HMGB1P27-201ENST00000431429 603 ntBASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 AC092573.2-201ENST00000434546 243 ntBASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 RPS20P5-201ENST00000434808 360 ntBASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 ELOCP7-201ENST00000439968 331 ntBASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 AC093392.2-201ENST00000450682 337 ntBASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 UQCRHP3-201ENST00000451503 251 ntBASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 C1DP4-201ENST00000455429 424 ntBASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 RN7SL633P-201ENST00000488974 297 ntBASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 RPL39P36-201ENST00000490784 156 ntBASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 AC117522.1-201ENST00000509821 380 ntBASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 AC006445.2-201ENST00000510061 472 ntBASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 RN7SKP132-201ENST00000516001 208 ntBASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 SNORD27.1-201ENST00000516319 72 ntBASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 SCARNA24.1-201ENST00000516465 137 ntBASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 RNU6-445P-201ENST00000516949 107 ntBASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 MIR4319-201ENST00000577285 85 ntBASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 AL161798.1-201ENST00000604630 131 ntBASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 AC103591.3-201ENST00000608684 209 ntBASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 AC008498.1-201ENST00000613012 531 ntBASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 AC073534.2-201ENST00000620377 381 ntBASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 AC007318.2-201ENST00000620999 243 ntBASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
CCDC3Q9BQI4 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 AC233263.6-201ENST00000631132 1963 ntBASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 AC092447.7-201ENST00000422212 1621 ntBASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 U3.6-201ENST00000363622 211 ntBASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 RNU6-946P-201ENST00000383878 107 ntBASIC2.84□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms