Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 AP000763.2-201ENST00000540641 163 ntBASIC4□□□□□ -1.77
CHFRQ96EP1 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4□□□□□ -1.77
CHFRQ96EP1 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4□□□□□ -1.77
CHFRQ96EP1 MIR3922-201ENST00000585192 84 ntBASIC4□□□□□ -1.77
CHFRQ96EP1 AL353997.4-201ENST00000586196 166 ntBASIC4□□□□□ -1.77
CHFRQ96EP1 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC4□□□□□ -1.77
CHFRQ96EP1 AC244505.7-201ENST00000599675 272 ntBASIC4□□□□□ -1.77
CHFRQ96EP1 SNRPGP15-201ENST00000600149 222 ntBASIC4□□□□□ -1.77
CHFRQ96EP1 AC007179.3-201ENST00000604976 235 ntBASIC4□□□□□ -1.77
CHFRQ96EP1 AC110741.2-201ENST00000605278 268 ntBASIC4□□□□□ -1.77
CHFRQ96EP1 AC098479.1-201ENST00000609225 154 ntBASIC4□□□□□ -1.77
CHFRQ96EP1 AC011890.2-201ENST00000613393 294 ntBASIC4□□□□□ -1.77
CHFRQ96EP1 MIR8062-201ENST00000621515 85 ntBASIC4□□□□□ -1.77
CHFRQ96EP1 PABPC1P7-201ENST00000413177 1513 ntBASIC4□□□□□ -1.77
CHFRQ96EP1 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
CHFRQ96EP1 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CHFRQ96EP1 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
CHFRQ96EP1 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
CHFRQ96EP1 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CHFRQ96EP1 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CHFRQ96EP1 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CHFRQ96EP1 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CHFRQ96EP1 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC3.99□□□□□ -1.77
CHFRQ96EP1 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CHFRQ96EP1 HSPE1P11-201ENST00000339579 310 ntBASIC3.99□□□□□ -1.77
CHFRQ96EP1 SNORD116-11-201ENST00000383882 92 ntBASIC3.99□□□□□ -1.77
CHFRQ96EP1 RNU6-444P-201ENST00000383988 108 ntBASIC3.99□□□□□ -1.77
CHFRQ96EP1 RNU6-1029P-201ENST00000384109 107 ntBASIC3.99□□□□□ -1.77
CHFRQ96EP1 SNORA9-201ENST00000384215 133 ntBASIC3.99□□□□□ -1.77
CHFRQ96EP1 PTMAP5-201ENST00000393073 333 ntBASIC3.99□□□□□ -1.77
CHFRQ96EP1 DSTNP4-201ENST00000399472 474 ntBASIC3.99□□□□□ -1.77
CHFRQ96EP1 RNU2-29P-201ENST00000410423 189 ntBASIC3.99□□□□□ -1.77
CHFRQ96EP1 AL159169.1-201ENST00000421119 127 ntBASIC3.99□□□□□ -1.77
CHFRQ96EP1 AL391219.1-201ENST00000422570 483 ntBASIC3.99□□□□□ -1.77
CHFRQ96EP1 RAC1P6-201ENST00000423911 575 ntBASIC3.99□□□□□ -1.77
CHFRQ96EP1 RPL23AP50-201ENST00000434149 455 ntBASIC3.99□□□□□ -1.77
CHFRQ96EP1 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.99□□□□□ -1.77
CHFRQ96EP1 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.99□□□□□ -1.77
CHFRQ96EP1 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.99□□□□□ -1.77
CHFRQ96EP1 AP003497.1-201ENST00000528472 562 ntBASIC3.99□□□□□ -1.77
CHFRQ96EP1 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.99□□□□□ -1.77
CHFRQ96EP1 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.99□□□□□ -1.77
CHFRQ96EP1 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.99□□□□□ -1.77
CHFRQ96EP1 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.99□□□□□ -1.77
CHFRQ96EP1 AC004805.2-201ENST00000605382 482 ntBASIC3.99□□□□□ -1.77
CHFRQ96EP1 uc_338.12-201ENST00000616344 181 ntBASIC3.99□□□□□ -1.77
CHFRQ96EP1 uc_338.34-201ENST00000617467 174 ntBASIC3.99□□□□□ -1.77
CHFRQ96EP1 MAPK10-253ENST00000641010 4072 ntBASIC3.99□□□□□ -1.77
CHFRQ96EP1 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC3.99□□□□□ -1.77
CHFRQ96EP1 AP001148.1-201ENST00000624124 2359 ntBASIC3.99□□□□□ -1.77
CHFRQ96EP1 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CHFRQ96EP1 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CHFRQ96EP1 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CHFRQ96EP1 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
CHFRQ96EP1 AC091812.1-201ENST00000432235 1948 ntBASIC3.99□□□□□ -1.77
CHFRQ96EP1 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.99□□□□□ -1.77
CHFRQ96EP1 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC3.99□□□□□ -1.77
CHFRQ96EP1 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
CHFRQ96EP1 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
CHFRQ96EP1 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
CHFRQ96EP1 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.98□□□□□ -1.77
CHFRQ96EP1 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
CHFRQ96EP1 Y_RNA.60-201ENST00000362831 98 ntBASIC3.98□□□□□ -1.77
CHFRQ96EP1 Y_RNA.404-201ENST00000383978 102 ntBASIC3.98□□□□□ -1.77
CHFRQ96EP1 Y_RNA.485-201ENST00000384395 102 ntBASIC3.98□□□□□ -1.77
CHFRQ96EP1 MIR558-201ENST00000384920 94 ntBASIC3.98□□□□□ -1.77
CHFRQ96EP1 MIR183-201ENST00000384958 110 ntBASIC3.98□□□□□ -1.77
CHFRQ96EP1 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
CHFRQ96EP1 RNU6-823P-201ENST00000391042 103 ntBASIC3.98□□□□□ -1.77
CHFRQ96EP1 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
CHFRQ96EP1 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
CHFRQ96EP1 AL360182.1-201ENST00000397433 468 ntBASIC3.98□□□□□ -1.77
CHFRQ96EP1 AL109755.1-201ENST00000401791 649 ntBASIC3.98□□□□□ -1.77
CHFRQ96EP1 RNA5SP39-201ENST00000411245 120 ntBASIC3.98□□□□□ -1.77
CHFRQ96EP1 OR6C66P-201ENST00000414917 930 ntBASIC3.98□□□□□ -1.77
CHFRQ96EP1 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC3.98□□□□□ -1.77
CHFRQ96EP1 AC008280.1-201ENST00000418851 412 ntBASIC3.98□□□□□ -1.77
CHFRQ96EP1 AC096632.1-201ENST00000427395 310 ntBASIC3.98□□□□□ -1.77
CHFRQ96EP1 AL591419.1-201ENST00000427423 339 ntBASIC3.98□□□□□ -1.77
CHFRQ96EP1 HMGN2P31-201ENST00000432430 273 ntBASIC3.98□□□□□ -1.77
CHFRQ96EP1 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.98□□□□□ -1.77
CHFRQ96EP1 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
CHFRQ96EP1 RPL21P2-201ENST00000440049 481 ntBASIC3.98□□□□□ -1.77
CHFRQ96EP1 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC3.98□□□□□ -1.77
CHFRQ96EP1 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC3.98□□□□□ -1.77
CHFRQ96EP1 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC3.98□□□□□ -1.77
CHFRQ96EP1 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.98□□□□□ -1.77
CHFRQ96EP1 RNU7-182P-201ENST00000459009 62 ntBASIC3.98□□□□□ -1.77
CHFRQ96EP1 RNU6-1132P-201ENST00000459214 107 ntBASIC3.98□□□□□ -1.77
CHFRQ96EP1 AC008571.1-201ENST00000467232 300 ntBASIC3.98□□□□□ -1.77
CHFRQ96EP1 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC3.98□□□□□ -1.77
CHFRQ96EP1 AC116655.1-201ENST00000508324 901 ntBASIC3.98□□□□□ -1.77
CHFRQ96EP1 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC3.98□□□□□ -1.77
CHFRQ96EP1 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.98□□□□□ -1.77
CHFRQ96EP1 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC3.98□□□□□ -1.77
CHFRQ96EP1 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.98□□□□□ -1.77
CHFRQ96EP1 MDM2-233ENST00000545204 398 ntTSL 5 BASIC3.98□□□□□ -1.77
CHFRQ96EP1 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.98□□□□□ -1.77
CHFRQ96EP1 RRN3P3-201ENST00000549207 578 ntBASIC3.98□□□□□ -1.77
CHFRQ96EP1 MIR4703-201ENST00000577728 79 ntBASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms