Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 SNORA67.4-201ENST00000384688 142 ntBASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 MIR147B-201ENST00000390185 80 ntBASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 RNU6-220P-201ENST00000390919 107 ntBASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 RNA5SP425-201ENST00000410336 112 ntBASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 RNU2-62P-201ENST00000410868 191 ntBASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 RAC1P6-201ENST00000423911 575 ntBASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 AL354941.1-201ENST00000438600 464 ntBASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 MTCO1P42-201ENST00000457379 726 ntBASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 AP006587.4-201ENST00000526053 529 ntBASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 AP003122.3-201ENST00000526316 255 ntBASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 AC090888.2-201ENST00000559765 1144 ntBASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 AC135628.1-201ENST00000568867 534 ntBASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 AP001004.1-201ENST00000582468 324 ntBASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 AC005261.5-201ENST00000596280 355 ntBASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 AL670379.6-201ENST00000603753 252 ntBASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 AL670379.11-201ENST00000604059 253 ntBASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 AC007621.1-201ENST00000604544 437 ntBASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 AC008162.1-201ENST00000604718 254 ntBASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 AL670379.1-201ENST00000604752 252 ntBASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 AC025588.2-201ENST00000604851 466 ntBASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 AL670379.5-201ENST00000605253 252 ntBASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 AL670379.12-201ENST00000605291 253 ntBASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 AL670379.8-201ENST00000605353 252 ntBASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 AL670379.7-201ENST00000605823 252 ntBASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 AL359198.2-201ENST00000611836 194 ntBASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 FRG1KP-201ENST00000623592 341 ntBASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 U6.99-201ENST00000637524 83 ntBASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 MTND5P30-201ENST00000452896 1731 ntBASIC2.62□□□□□ -1.99
HDDC3Q8N4P3 MTND4P35-201ENST00000604257 1375 ntBASIC2.61□□□□□ -1.99
HDDC3Q8N4P3 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.61□□□□□ -1.99
HDDC3Q8N4P3 NACAP2-201ENST00000318548 624 ntBASIC2.61□□□□□ -1.99
HDDC3Q8N4P3 Y_RNA.46-201ENST00000362695 102 ntBASIC2.61□□□□□ -1.99
HDDC3Q8N4P3 RNA5SP393-201ENST00000363423 117 ntBASIC2.61□□□□□ -1.99
HDDC3Q8N4P3 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC2.61□□□□□ -1.99
HDDC3Q8N4P3 RNU6-19P-201ENST00000384718 107 ntBASIC2.61□□□□□ -1.99
HDDC3Q8N4P3 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC2.61□□□□□ -1.99
HDDC3Q8N4P3 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.61□□□□□ -1.99
HDDC3Q8N4P3 RNU6-953P-201ENST00000459154 107 ntBASIC2.61□□□□□ -1.99
HDDC3Q8N4P3 RBM43P1-201ENST00000476891 1081 ntBASIC2.61□□□□□ -1.99
HDDC3Q8N4P3 RPS27AP9-201ENST00000477681 438 ntBASIC2.61□□□□□ -1.99
HDDC3Q8N4P3 SRIP1-201ENST00000489235 288 ntBASIC2.61□□□□□ -1.99
HDDC3Q8N4P3 AC139453.3-201ENST00000493276 369 ntBASIC2.61□□□□□ -1.99
HDDC3Q8N4P3 AC116347.2-201ENST00000514912 523 ntBASIC2.61□□□□□ -1.99
HDDC3Q8N4P3 RNA5SP282-201ENST00000516355 108 ntBASIC2.61□□□□□ -1.99
HDDC3Q8N4P3 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC2.61□□□□□ -1.99
HDDC3Q8N4P3 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC2.61□□□□□ -1.99
HDDC3Q8N4P3 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC2.61□□□□□ -1.99
HDDC3Q8N4P3 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.61□□□□□ -1.99
HDDC3Q8N4P3 AL354943.1-201ENST00000572103 781 ntBASIC2.61□□□□□ -1.99
HDDC3Q8N4P3 MIR4765-201ENST00000585007 77 ntBASIC2.61□□□□□ -1.99
HDDC3Q8N4P3 AL021997.1-201ENST00000605757 193 ntBASIC2.61□□□□□ -1.99
HDDC3Q8N4P3 AC107214.2-201ENST00000608204 634 ntBASIC2.61□□□□□ -1.99
HDDC3Q8N4P3 AC010678.1-201ENST00000614118 713 ntBASIC2.61□□□□□ -1.99
HDDC3Q8N4P3 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
HDDC3Q8N4P3 AL031667.3-201ENST00000620124 655 ntBASIC2.61□□□□□ -1.99
HDDC3Q8N4P3 AL589994.2-201ENST00000621124 579 ntBASIC2.61□□□□□ -1.99
HDDC3Q8N4P3 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.61□□□□□ -1.99
HDDC3Q8N4P3 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC2.61□□□□□ -1.99
HDDC3Q8N4P3 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 RNY3P13-201ENST00000365542 102 ntBASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 RNU6-1200P-201ENST00000384162 107 ntBASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 RNU6-817P-201ENST00000391083 104 ntBASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 RPS4XP7-201ENST00000406274 780 ntBASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 RNU4-53P-201ENST00000410828 140 ntBASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 USP9YP20-201ENST00000419224 558 ntBASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 AL592045.1-201ENST00000429867 352 ntBASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 AL353705.4-201ENST00000449661 238 ntBASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 AC072039.1-201ENST00000477611 581 ntBASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 RPS29P21-201ENST00000496272 170 ntBASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 HSPE1P23-201ENST00000509838 286 ntBASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 RNU6-703P-201ENST00000516946 107 ntBASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 SCARNA3-201ENST00000517097 143 ntBASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 IGKV3-31-201ENST00000523109 329 ntBASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 OR5BN1P-201ENST00000532955 829 ntBASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 RPS3AP4-201ENST00000555161 764 ntBASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 AC027176.1-201ENST00000560204 514 ntBASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 MIR3146-201ENST00000580367 79 ntBASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 AC245884.10-201ENST00000597355 337 ntBASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 BNIP3P9-201ENST00000603714 553 ntBASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms