Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 SNORA70F-201ENST00000384142 135 ntBASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 MIR659-201ENST00000384963 97 ntBASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 SNORA12.2-201ENST00000391040 156 ntBASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 SNORA40C-201ENST00000391285 128 ntBASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 MIR921-201ENST00000401133 56 ntBASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 MIR298-201ENST00000401212 88 ntBASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 RNA5SP36-201ENST00000410197 133 ntBASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 AC091390.3-201ENST00000426478 338 ntBASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 AC006466.1-201ENST00000438721 289 ntBASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 PIGFP3-201ENST00000441918 722 ntBASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 HIGD1AP2-201ENST00000446367 280 ntBASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 AL136097.1-201ENST00000456945 913 ntBASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 RNU7-175P-201ENST00000515915 61 ntBASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 MAL2-206ENST00000522187 547 ntTSL 4 BASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 AP004371.1-201ENST00000525240 214 ntBASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 AP002770.2-201ENST00000543613 532 ntBASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 AC130289.1-201ENST00000577321 73 ntBASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 AC007448.1-201ENST00000582714 234 ntBASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 MIR6780A-201ENST00000615089 68 ntBASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 AC005086.4-201ENST00000623065 213 ntBASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 OR14L1P-202ENST00000641545 3009 ntBASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 AC125257.1-201ENST00000560400 2930 ntBASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 DDX18P3-201ENST00000404856 2007 ntBASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 RNU6-741P-201ENST00000383889 107 ntBASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 Y_RNA.462-201ENST00000384268 102 ntBASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 MIR10A-201ENST00000385043 110 ntBASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 RPL21P75-201ENST00000396599 483 ntBASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 RPL21P28-201ENST00000401418 483 ntBASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 Z98745.1-201ENST00000402553 494 ntBASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 AL590556.1-201ENST00000423231 483 ntBASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 AC091286.1-201ENST00000431233 461 ntBASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 AL445305.1-201ENST00000432577 575 ntBASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 RPL21P11-201ENST00000461458 483 ntBASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 RPL21P39-201ENST00000463605 483 ntBASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 AC132942.1-201ENST00000486753 483 ntBASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 AC093591.1-201ENST00000491435 481 ntBASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 RPL21P16-201ENST00000495531 483 ntBASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 RNA5SP360-201ENST00000516555 118 ntBASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 Y_RNA.706-201ENST00000516933 99 ntBASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 RNA5SP291-201ENST00000517222 105 ntBASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 AC103996.1-201ENST00000555468 102 ntBASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 MIR4300-201ENST00000581016 96 ntBASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 RPL23AP78-201ENST00000599928 470 ntBASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 AC006557.5-201ENST00000603126 811 ntBASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 Y_RNA.772-201ENST00000606692 102 ntBASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 MIR6730-201ENST00000622213 67 ntBASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 AC027309.3-201ENST00000623419 351 ntBASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 MFSD8-216ENST00000641147 4009 ntBASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
UBE3DQ7Z6J8 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
UBE3DQ7Z6J8 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.34□□□□□ -1.71
UBE3DQ7Z6J8 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
UBE3DQ7Z6J8 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
UBE3DQ7Z6J8 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
UBE3DQ7Z6J8 AC079741.1-201ENST00000321498 212 ntBASIC4.34□□□□□ -1.71
UBE3DQ7Z6J8 Y_RNA.270-201ENST00000364693 104 ntBASIC4.34□□□□□ -1.71
UBE3DQ7Z6J8 RNA5SP397-201ENST00000391323 118 ntBASIC4.34□□□□□ -1.71
UBE3DQ7Z6J8 RNU2-33P-201ENST00000410344 192 ntBASIC4.34□□□□□ -1.71
UBE3DQ7Z6J8 AC244098.2-201ENST00000422068 99 ntBASIC4.34□□□□□ -1.71
UBE3DQ7Z6J8 RPL27AP8-201ENST00000424277 446 ntBASIC4.34□□□□□ -1.71
UBE3DQ7Z6J8 AL590383.1-201ENST00000428602 75 ntBASIC4.34□□□□□ -1.71
UBE3DQ7Z6J8 AL591043.1-201ENST00000432461 424 ntBASIC4.34□□□□□ -1.71
UBE3DQ7Z6J8 AL139109.1-201ENST00000455491 297 ntBASIC4.34□□□□□ -1.71
UBE3DQ7Z6J8 RPS29P27-201ENST00000463711 170 ntBASIC4.34□□□□□ -1.71
UBE3DQ7Z6J8 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC4.34□□□□□ -1.71
UBE3DQ7Z6J8 RNA5SP290-201ENST00000517133 127 ntBASIC4.34□□□□□ -1.71
UBE3DQ7Z6J8 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC4.34□□□□□ -1.71
UBE3DQ7Z6J8 SYF2P1-201ENST00000550658 413 ntBASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 200.4 ms