Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC1.42□□□□□ -2.18
NUP98P52948 RPS29P1-201ENST00000465274 159 ntBASIC1.42□□□□□ -2.18
NUP98P52948 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC1.42□□□□□ -2.18
NUP98P52948 AC104685.1-201ENST00000502445 371 ntBASIC1.42□□□□□ -2.18
NUP98P52948 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC1.42□□□□□ -2.18
NUP98P52948 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC1.42□□□□□ -2.18
NUP98P52948 AC123912.5-201ENST00000605470 343 ntBASIC1.42□□□□□ -2.18
NUP98P52948 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
NUP98P52948 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.42□□□□□ -2.18
NUP98P52948 ANKRD26P2-201ENST00000445530 1710 ntBASIC1.41□□□□□ -2.18
NUP98P52948 RNU6-619P-201ENST00000365146 108 ntBASIC1.41□□□□□ -2.18
NUP98P52948 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
NUP98P52948 MIR135A2-201ENST00000384854 100 ntBASIC1.41□□□□□ -2.18
NUP98P52948 MORN2-203ENST00000409131 544 ntTSL 5 BASIC1.41□□□□□ -2.18
NUP98P52948 CYCSP33-201ENST00000414485 327 ntBASIC1.41□□□□□ -2.18
NUP98P52948 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC1.41□□□□□ -2.18
NUP98P52948 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC1.41□□□□□ -2.18
NUP98P52948 EIF4EP4-201ENST00000424916 578 ntBASIC1.41□□□□□ -2.18
NUP98P52948 GTF2IP20-201ENST00000431663 360 ntBASIC1.41□□□□□ -2.18
NUP98P52948 NDUFA5P7-201ENST00000452914 242 ntBASIC1.41□□□□□ -2.18
NUP98P52948 SUMO2P2-201ENST00000456482 255 ntBASIC1.41□□□□□ -2.18
NUP98P52948 AC112518.2-201ENST00000508565 425 ntBASIC1.41□□□□□ -2.18
NUP98P52948 AP000907.2-201ENST00000530827 353 ntBASIC1.41□□□□□ -2.18
NUP98P52948 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.41□□□□□ -2.18
NUP98P52948 VBP1-203ENST00000535916 944 ntTSL 2 BASIC1.41□□□□□ -2.18
NUP98P52948 UBE2L4-201ENST00000587688 464 ntBASIC1.41□□□□□ -2.18
NUP98P52948 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC1.41□□□□□ -2.18
NUP98P52948 AC007038.2-201ENST00000608095 740 ntBASIC1.41□□□□□ -2.18
NUP98P52948 AC008498.1-201ENST00000613012 531 ntBASIC1.41□□□□□ -2.18
NUP98P52948 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC1.41□□□□□ -2.18
NUP98P52948 MIR222-201ENST00000384992 110 ntBASIC1.4□□□□□ -2.18
NUP98P52948 OFD1P2Y-201ENST00000421895 1149 ntBASIC1.4□□□□□ -2.18
NUP98P52948 AC055731.1-201ENST00000474387 401 ntBASIC1.4□□□□□ -2.18
NUP98P52948 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC1.4□□□□□ -2.18
NUP98P52948 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC1.4□□□□□ -2.18
NUP98P52948 RNU6-1223P-201ENST00000517124 104 ntBASIC1.4□□□□□ -2.18
NUP98P52948 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC1.4□□□□□ -2.18
NUP98P52948 AP001033.2-201ENST00000609701 1003 ntBASIC1.4□□□□□ -2.18
NUP98P52948 AC091895.1-201ENST00000624494 256 ntBASIC1.4□□□□□ -2.18
NUP98P52948 AL159972.1-201ENST00000625150 448 ntBASIC1.4□□□□□ -2.18
NUP98P52948 MIR4275-201ENST00000636486 87 ntBASIC1.4□□□□□ -2.18
NUP98P52948 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
NUP98P52948 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
NUP98P52948 SNORD114-27-201ENST00000363766 70 ntBASIC1.4□□□□□ -2.19
NUP98P52948 RNU6-115P-201ENST00000364310 107 ntBASIC1.4□□□□□ -2.19
NUP98P52948 RNU4-38P-201ENST00000364472 129 ntBASIC1.4□□□□□ -2.19
NUP98P52948 SNORD51.1-201ENST00000365405 77 ntBASIC1.4□□□□□ -2.19
NUP98P52948 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC1.4□□□□□ -2.19
NUP98P52948 MIR16-1-201ENST00000385271 89 ntBASIC1.4□□□□□ -2.19
NUP98P52948 THAP5P1-201ENST00000439089 262 ntBASIC1.4□□□□□ -2.19
NUP98P52948 GPM6BP3-201ENST00000442797 145 ntBASIC1.4□□□□□ -2.19
NUP98P52948 AL050341.1-201ENST00000447743 313 ntBASIC1.4□□□□□ -2.19
NUP98P52948 AL500527.1-201ENST00000448532 255 ntBASIC1.4□□□□□ -2.19
NUP98P52948 ATG12P2-201ENST00000456830 416 ntBASIC1.4□□□□□ -2.19
NUP98P52948 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC1.4□□□□□ -2.19
NUP98P52948 RN7SKP265-201ENST00000516448 223 ntBASIC1.4□□□□□ -2.19
NUP98P52948 SNORA31.22-201ENST00000517204 135 ntBASIC1.4□□□□□ -2.19
NUP98P52948 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.4□□□□□ -2.19
NUP98P52948 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.4□□□□□ -2.19
NUP98P52948 AC012414.2-201ENST00000559474 187 ntBASIC1.4□□□□□ -2.19
NUP98P52948 NIFKP8-201ENST00000560500 874 ntBASIC1.4□□□□□ -2.19
NUP98P52948 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC1.4□□□□□ -2.19
NUP98P52948 ABBA01006766.1-201ENST00000584728 294 ntBASIC1.4□□□□□ -2.19
NUP98P52948 AC135507.1-201ENST00000607214 561 ntBASIC1.4□□□□□ -2.19
NUP98P52948 AC004067.1-201ENST00000608733 700 ntBASIC1.4□□□□□ -2.19
NUP98P52948 AC083806.3-201ENST00000614016 455 ntBASIC1.4□□□□□ -2.19
NUP98P52948 MIR6779-201ENST00000617283 64 ntBASIC1.4□□□□□ -2.19
NUP98P52948 AL161722.3-201ENST00000605789 2983 ntBASIC1.39□□□□□ -2.19
NUP98P52948 AC010889.1-201ENST00000566193 2666 ntBASIC1.39□□□□□ -2.19
NUP98P52948 RNU6-750P-201ENST00000390946 107 ntBASIC1.39□□□□□ -2.19
NUP98P52948 AL353689.1-201ENST00000438895 199 ntBASIC1.39□□□□□ -2.19
NUP98P52948 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC1.39□□□□□ -2.19
NUP98P52948 Z82210.1-201ENST00000440037 231 ntBASIC1.39□□□□□ -2.19
NUP98P52948 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.39□□□□□ -2.19
NUP98P52948 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC1.39□□□□□ -2.19
NUP98P52948 SNORD19.2-201ENST00000516978 73 ntBASIC1.39□□□□□ -2.19
NUP98P52948 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC1.39□□□□□ -2.19
NUP98P52948 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC1.39□□□□□ -2.19
NUP98P52948 AC008127.2-201ENST00000549925 1075 ntBASIC1.39□□□□□ -2.19
NUP98P52948 AL022067.1-201ENST00000602426 454 ntBASIC1.39□□□□□ -2.19
NUP98P52948 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC1.39□□□□□ -2.19
NUP98P52948 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
NUP98P52948 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
NUP98P52948 RNU1-148P-201ENST00000384472 162 ntBASIC1.38□□□□□ -2.19
NUP98P52948 MIR758-201ENST00000390227 88 ntBASIC1.38□□□□□ -2.19
NUP98P52948 MIR888-201ENST00000401186 77 ntBASIC1.38□□□□□ -2.19
NUP98P52948 MIR548J-201ENST00000408833 112 ntBASIC1.38□□□□□ -2.19
NUP98P52948 HMGB1P49-201ENST00000418882 569 ntBASIC1.38□□□□□ -2.19
NUP98P52948 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC1.38□□□□□ -2.19
NUP98P52948 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC1.38□□□□□ -2.19
NUP98P52948 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC1.38□□□□□ -2.19
NUP98P52948 RPL23AP3-201ENST00000453844 468 ntBASIC1.38□□□□□ -2.19
NUP98P52948 RPS15AP17-201ENST00000470598 390 ntBASIC1.38□□□□□ -2.19
NUP98P52948 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.38□□□□□ -2.19
NUP98P52948 AF213884.2-201ENST00000510417 903 ntBASIC1.38□□□□□ -2.19
NUP98P52948 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.38□□□□□ -2.19
NUP98P52948 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC1.38□□□□□ -2.19
NUP98P52948 SCARNA15.2-201ENST00000516409 127 ntBASIC1.38□□□□□ -2.19
NUP98P52948 HSBP1P1-201ENST00000555205 166 ntBASIC1.38□□□□□ -2.19
NUP98P52948 AL137100.2-201ENST00000555786 315 ntBASIC1.38□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 110.6 ms