Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 uc_338.11-201ENST00000619132 160 ntBASIC3.98□□□□□ -1.77
SMARCA1P28370 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
SMARCA1P28370 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.98□□□□□ -1.77
SMARCA1P28370 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SMARCA1P28370 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.97□□□□□ -1.77
SMARCA1P28370 ZNF826P-207ENST00000622273 1910 ntBASIC3.97□□□□□ -1.77
SMARCA1P28370 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
SMARCA1P28370 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.97□□□□□ -1.77
SMARCA1P28370 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.97□□□□□ -1.77
SMARCA1P28370 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.97□□□□□ -1.77
SMARCA1P28370 MIR514A1-201ENST00000385133 98 ntBASIC3.97□□□□□ -1.77
SMARCA1P28370 CD3D-202ENST00000392884 476 ntTSL 2 BASIC3.97□□□□□ -1.77
SMARCA1P28370 MIR1290-201ENST00000408735 78 ntBASIC3.97□□□□□ -1.77
SMARCA1P28370 RNU2-41P-201ENST00000410991 178 ntBASIC3.97□□□□□ -1.77
SMARCA1P28370 AC093578.1-201ENST00000415219 368 ntBASIC3.97□□□□□ -1.77
SMARCA1P28370 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC3.97□□□□□ -1.77
SMARCA1P28370 RPL7L1P10-201ENST00000427790 463 ntBASIC3.97□□□□□ -1.77
SMARCA1P28370 AC097713.2-201ENST00000430199 356 ntBASIC3.97□□□□□ -1.77
SMARCA1P28370 TXNP1-201ENST00000441872 371 ntBASIC3.97□□□□□ -1.77
SMARCA1P28370 SNRPFP3-201ENST00000457792 225 ntBASIC3.97□□□□□ -1.77
SMARCA1P28370 RPS4XP2-201ENST00000458402 793 ntBASIC3.97□□□□□ -1.77
SMARCA1P28370 RPS23P3-201ENST00000470993 430 ntBASIC3.97□□□□□ -1.77
SMARCA1P28370 AC025518.1-201ENST00000479856 347 ntBASIC3.97□□□□□ -1.77
SMARCA1P28370 RPL21P99-201ENST00000480369 423 ntBASIC3.97□□□□□ -1.77
SMARCA1P28370 RPL21P13-201ENST00000488305 481 ntBASIC3.97□□□□□ -1.77
SMARCA1P28370 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.97□□□□□ -1.77
SMARCA1P28370 AP001804.3-201ENST00000525146 880 ntBASIC3.97□□□□□ -1.77
SMARCA1P28370 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC3.97□□□□□ -1.77
SMARCA1P28370 AC091135.1-201ENST00000585943 307 ntBASIC3.97□□□□□ -1.77
SMARCA1P28370 AC084757.4-201ENST00000616350 526 ntBASIC3.97□□□□□ -1.77
SMARCA1P28370 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
SMARCA1P28370 SDAD1P2-201ENST00000441308 2028 ntBASIC3.97□□□□□ -1.77
SMARCA1P28370 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SMARCA1P28370 SNORA63.1-201ENST00000362493 131 ntBASIC3.96□□□□□ -1.78
SMARCA1P28370 RNU6-288P-201ENST00000363690 104 ntBASIC3.96□□□□□ -1.78
SMARCA1P28370 RNU4-66P-201ENST00000365199 138 ntBASIC3.96□□□□□ -1.78
SMARCA1P28370 RNU6-767P-201ENST00000384132 107 ntBASIC3.96□□□□□ -1.78
SMARCA1P28370 MIR490-201ENST00000384865 128 ntBASIC3.96□□□□□ -1.78
SMARCA1P28370 RNU6-1009P-201ENST00000390996 107 ntBASIC3.96□□□□□ -1.78
SMARCA1P28370 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
SMARCA1P28370 RNU6-387P-201ENST00000411331 105 ntBASIC3.96□□□□□ -1.78
SMARCA1P28370 OR6C66P-201ENST00000414917 930 ntBASIC3.96□□□□□ -1.78
SMARCA1P28370 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.96□□□□□ -1.78
SMARCA1P28370 ERLEC1P1-201ENST00000433806 578 ntBASIC3.96□□□□□ -1.78
SMARCA1P28370 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC3.96□□□□□ -1.78
SMARCA1P28370 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC3.96□□□□□ -1.78
SMARCA1P28370 CCDC34P1-201ENST00000507441 517 ntBASIC3.96□□□□□ -1.78
SMARCA1P28370 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.96□□□□□ -1.78
SMARCA1P28370 AC112206.3-201ENST00000514578 389 ntBASIC3.96□□□□□ -1.78
SMARCA1P28370 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.96□□□□□ -1.78
SMARCA1P28370 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.96□□□□□ -1.78
SMARCA1P28370 AL118558.2-201ENST00000556294 238 ntBASIC3.96□□□□□ -1.78
SMARCA1P28370 FGF7P1-201ENST00000582820 288 ntBASIC3.96□□□□□ -1.78
SMARCA1P28370 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.96□□□□□ -1.78
SMARCA1P28370 AC174048.1-201ENST00000603389 144 ntBASIC3.96□□□□□ -1.78
SMARCA1P28370 AL136221.1-201ENST00000621449 509 ntBASIC3.96□□□□□ -1.78
SMARCA1P28370 PLCE1P1-201ENST00000622094 305 ntBASIC3.96□□□□□ -1.78
SMARCA1P28370 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
SMARCA1P28370 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.96□□□□□ -1.78
SMARCA1P28370 OR4G2P-202ENST00000641004 1759 ntBASIC3.96□□□□□ -1.78
SMARCA1P28370 AC090740.1-201ENST00000623193 2262 ntBASIC3.96□□□□□ -1.78
SMARCA1P28370 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.96□□□□□ -1.78
SMARCA1P28370 TPTE2P4-201ENST00000258589 1605 ntBASIC3.95□□□□□ -1.78
SMARCA1P28370 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
SMARCA1P28370 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
SMARCA1P28370 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
SMARCA1P28370 AC103710.2-202ENST00000641454 2853 ntBASIC3.95□□□□□ -1.78
SMARCA1P28370 RNU6-797P-201ENST00000363101 109 ntBASIC3.95□□□□□ -1.78
SMARCA1P28370 RNU6-522P-201ENST00000364497 107 ntBASIC3.95□□□□□ -1.78
SMARCA1P28370 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.95□□□□□ -1.78
SMARCA1P28370 AL591034.1-201ENST00000407447 340 ntBASIC3.95□□□□□ -1.78
SMARCA1P28370 AC006946.1-201ENST00000429106 328 ntBASIC3.95□□□□□ -1.78
SMARCA1P28370 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.95□□□□□ -1.78
SMARCA1P28370 AL158071.1-201ENST00000430315 461 ntBASIC3.95□□□□□ -1.78
SMARCA1P28370 CYCSP35-201ENST00000451978 304 ntBASIC3.95□□□□□ -1.78
SMARCA1P28370 RPL23AP14-201ENST00000468281 468 ntBASIC3.95□□□□□ -1.78
SMARCA1P28370 RPL23AP11-201ENST00000475260 469 ntBASIC3.95□□□□□ -1.78
SMARCA1P28370 AC021205.2-201ENST00000480069 347 ntBASIC3.95□□□□□ -1.78
SMARCA1P28370 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.95□□□□□ -1.78
SMARCA1P28370 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.95□□□□□ -1.78
SMARCA1P28370 RNU6-1038P-201ENST00000516516 104 ntBASIC3.95□□□□□ -1.78
SMARCA1P28370 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.95□□□□□ -1.78
SMARCA1P28370 AC107953.1-201ENST00000522216 297 ntBASIC3.95□□□□□ -1.78
SMARCA1P28370 RANP3-201ENST00000530970 276 ntBASIC3.95□□□□□ -1.78
SMARCA1P28370 RAB11AP2-201ENST00000545905 639 ntBASIC3.95□□□□□ -1.78
SMARCA1P28370 BNIP3P6-201ENST00000549284 499 ntBASIC3.95□□□□□ -1.78
SMARCA1P28370 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.95□□□□□ -1.78
SMARCA1P28370 C8orf59P2-201ENST00000603441 271 ntBASIC3.95□□□□□ -1.78
SMARCA1P28370 AL670379.4-201ENST00000605279 254 ntBASIC3.95□□□□□ -1.78
SMARCA1P28370 AL158032.1-201ENST00000605401 106 ntBASIC3.95□□□□□ -1.78
SMARCA1P28370 AC069200.1-201ENST00000609511 323 ntBASIC3.95□□□□□ -1.78
SMARCA1P28370 AL390240.1-201ENST00000612950 384 ntBASIC3.95□□□□□ -1.78
SMARCA1P28370 AL359314.1-201ENST00000616913 261 ntBASIC3.95□□□□□ -1.78
SMARCA1P28370 uc_338.34-201ENST00000617467 174 ntBASIC3.95□□□□□ -1.78
SMARCA1P28370 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC3.95□□□□□ -1.78
SMARCA1P28370 MTND5P42-201ENST00000637720 498 ntBASIC3.95□□□□□ -1.78
SMARCA1P28370 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
SMARCA1P28370 AC017071.1-201ENST00000564407 2204 ntBASIC3.95□□□□□ -1.78
SMARCA1P28370 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
SMARCA1P28370 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms