Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC0.71□□□□□ -2.3
HMGA1P17096 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC0.71□□□□□ -2.3
HMGA1P17096 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC0.71□□□□□ -2.3
HMGA1P17096 CR769776.1-201ENST00000441254 787 ntBASIC0.71□□□□□ -2.3
HMGA1P17096 AL096803.2-201ENST00000450032 677 ntBASIC0.71□□□□□ -2.3
HMGA1P17096 RFC5P1-201ENST00000454419 874 ntBASIC0.71□□□□□ -2.3
HMGA1P17096 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC0.71□□□□□ -2.3
HMGA1P17096 AC117454.1-201ENST00000491120 168 ntBASIC0.71□□□□□ -2.3
HMGA1P17096 AC093767.1-201ENST00000504523 156 ntBASIC0.71□□□□□ -2.3
HMGA1P17096 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC0.71□□□□□ -2.3
HMGA1P17096 RNU6-362P-201ENST00000516736 90 ntBASIC0.71□□□□□ -2.3
HMGA1P17096 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC0.71□□□□□ -2.3
HMGA1P17096 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC0.71□□□□□ -2.3
HMGA1P17096 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC0.71□□□□□ -2.3
HMGA1P17096 RPL21P5-201ENST00000554662 472 ntBASIC0.71□□□□□ -2.3
HMGA1P17096 AC023825.1-201ENST00000566704 1030 ntBASIC0.71□□□□□ -2.3
HMGA1P17096 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC0.71□□□□□ -2.3
HMGA1P17096 AL669831.4-202ENST00000590817 238 ntBASIC0.71□□□□□ -2.3
HMGA1P17096 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC0.71□□□□□ -2.3
HMGA1P17096 AC013244.2-201ENST00000603396 103 ntBASIC0.71□□□□□ -2.3
HMGA1P17096 AC015849.6-201ENST00000605454 474 ntBASIC0.71□□□□□ -2.3
HMGA1P17096 AC103810.8-201ENST00000607347 118 ntBASIC0.71□□□□□ -2.3
HMGA1P17096 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC0.71□□□□□ -2.3
HMGA1P17096 RNU6-1187P-201ENST00000364771 110 ntBASIC0.7□□□□□ -2.3
HMGA1P17096 RNU6-338P-201ENST00000383888 105 ntBASIC0.7□□□□□ -2.3
HMGA1P17096 RNU6-342P-201ENST00000384521 104 ntBASIC0.7□□□□□ -2.3
HMGA1P17096 MIR618-201ENST00000385287 98 ntBASIC0.7□□□□□ -2.3
HMGA1P17096 RNA5SP56-201ENST00000410277 118 ntBASIC0.7□□□□□ -2.3
HMGA1P17096 RPL37P10-201ENST00000412884 288 ntBASIC0.7□□□□□ -2.3
HMGA1P17096 USP9YP35-201ENST00000435696 412 ntBASIC0.7□□□□□ -2.3
HMGA1P17096 DYNLT3P2-201ENST00000442517 295 ntBASIC0.7□□□□□ -2.3
HMGA1P17096 RPL39P29-201ENST00000447779 157 ntBASIC0.7□□□□□ -2.3
HMGA1P17096 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
HMGA1P17096 ATP5J2P3-201ENST00000451550 258 ntBASIC0.7□□□□□ -2.3
HMGA1P17096 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC0.7□□□□□ -2.3
HMGA1P17096 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.7□□□□□ -2.3
HMGA1P17096 KATNBL1P4-201ENST00000503545 918 ntBASIC0.7□□□□□ -2.3
HMGA1P17096 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC0.7□□□□□ -2.3
HMGA1P17096 AC112198.4-201ENST00000515450 351 ntBASIC0.7□□□□□ -2.3
HMGA1P17096 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC0.7□□□□□ -2.3
HMGA1P17096 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC0.7□□□□□ -2.3
HMGA1P17096 AL731537.2-201ENST00000561565 951 ntBASIC0.7□□□□□ -2.3
HMGA1P17096 AL512605.2-201ENST00000592972 256 ntBASIC0.7□□□□□ -2.3
HMGA1P17096 AC068057.2-201ENST00000624047 895 ntBASIC0.7□□□□□ -2.3
HMGA1P17096 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
HMGA1P17096 RNU6-1249P-201ENST00000363237 111 ntBASIC0.69□□□□□ -2.3
HMGA1P17096 SNORA25.8-201ENST00000364831 128 ntBASIC0.69□□□□□ -2.3
HMGA1P17096 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC0.69□□□□□ -2.3
HMGA1P17096 RNU6-272P-201ENST00000411028 104 ntBASIC0.69□□□□□ -2.3
HMGA1P17096 EDDM3CP-201ENST00000415977 425 ntBASIC0.69□□□□□ -2.3
HMGA1P17096 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC0.69□□□□□ -2.3
HMGA1P17096 AL445305.1-201ENST00000432577 575 ntBASIC0.69□□□□□ -2.3
HMGA1P17096 TRAPPC2P8-201ENST00000440676 396 ntBASIC0.69□□□□□ -2.3
HMGA1P17096 TRAPPC2P3-201ENST00000443200 321 ntBASIC0.69□□□□□ -2.3
HMGA1P17096 MTND6P13-201ENST00000443510 523 ntBASIC0.69□□□□□ -2.3
HMGA1P17096 RNA5SP57-201ENST00000459463 123 ntBASIC0.69□□□□□ -2.3
HMGA1P17096 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC0.69□□□□□ -2.3
HMGA1P17096 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC0.69□□□□□ -2.3
HMGA1P17096 SUB1P4-201ENST00000566062 339 ntBASIC0.69□□□□□ -2.3
HMGA1P17096 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC0.69□□□□□ -2.3
HMGA1P17096 AL590095.2-201ENST00000604136 117 ntBASIC0.69□□□□□ -2.3
HMGA1P17096 AC068276.1-201ENST00000605793 379 ntBASIC0.69□□□□□ -2.3
HMGA1P17096 DUXAP10-204ENST00000612052 616 ntBASIC0.69□□□□□ -2.3
HMGA1P17096 U4atac.1-201ENST00000618345 95 ntBASIC0.69□□□□□ -2.3
HMGA1P17096 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC0.69□□□□□ -2.3
HMGA1P17096 MIR6513-201ENST00000621188 64 ntBASIC0.69□□□□□ -2.3
HMGA1P17096 AC073308.1-201ENST00000623696 305 ntBASIC0.69□□□□□ -2.3
HMGA1P17096 AL442644.1-201ENST00000454390 3105 ntBASIC0.69□□□□□ -2.3
HMGA1P17096 RNU6-1074P-201ENST00000383995 104 ntBASIC0.68□□□□□ -2.3
HMGA1P17096 RNU6-1222P-201ENST00000384615 107 ntBASIC0.68□□□□□ -2.3
HMGA1P17096 MIR613-201ENST00000385248 95 ntBASIC0.68□□□□□ -2.3
HMGA1P17096 UBE2V1P9-201ENST00000414760 368 ntBASIC0.68□□□□□ -2.3
HMGA1P17096 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC0.68□□□□□ -2.3
HMGA1P17096 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC0.68□□□□□ -2.3
HMGA1P17096 AL714022.1-201ENST00000439897 151 ntBASIC0.68□□□□□ -2.3
HMGA1P17096 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC0.68□□□□□ -2.3
HMGA1P17096 AC116337.2-201ENST00000477662 156 ntBASIC0.68□□□□□ -2.3
HMGA1P17096 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC0.68□□□□□ -2.3
HMGA1P17096 AC093677.1-201ENST00000514414 678 ntBASIC0.68□□□□□ -2.3
HMGA1P17096 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC0.68□□□□□ -2.3
HMGA1P17096 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC0.68□□□□□ -2.3
HMGA1P17096 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC0.68□□□□□ -2.3
HMGA1P17096 CYP4A27P-201ENST00000567218 190 ntBASIC0.68□□□□□ -2.3
HMGA1P17096 AC074051.3-201ENST00000570238 358 ntBASIC0.68□□□□□ -2.3
HMGA1P17096 AC112191.3-201ENST00000604371 277 ntBASIC0.68□□□□□ -2.3
HMGA1P17096 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC0.68□□□□□ -2.3
HMGA1P17096 AC092192.1-201ENST00000633154 1018 ntBASIC0.68□□□□□ -2.3
HMGA1P17096 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC0.68□□□□□ -2.3
HMGA1P17096 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC0.68□□□□□ -2.3
HMGA1P17096 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC0.67□□□□□ -2.3
HMGA1P17096 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
HMGA1P17096 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC0.67□□□□□ -2.3
HMGA1P17096 AC016716.1-201ENST00000265882 708 ntBASIC0.67□□□□□ -2.3
HMGA1P17096 RNU4-23P-201ENST00000362839 140 ntBASIC0.67□□□□□ -2.3
HMGA1P17096 RNU6-582P-201ENST00000362989 107 ntBASIC0.67□□□□□ -2.3
HMGA1P17096 MIR30A-201ENST00000385092 71 ntBASIC0.67□□□□□ -2.3
HMGA1P17096 HMGN2P39-201ENST00000398005 273 ntBASIC0.67□□□□□ -2.3
HMGA1P17096 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC0.67□□□□□ -2.3
HMGA1P17096 AC234064.1-201ENST00000436312 247 ntBASIC0.67□□□□□ -2.3
HMGA1P17096 RPS20P20-201ENST00000460498 340 ntBASIC0.67□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms