Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 U3.19-201ENST00000390893 196 ntBASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 RNA5SP296-201ENST00000410523 111 ntBASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 NDUFB4P8-201ENST00000435351 367 ntBASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 RPL31P13-201ENST00000484151 370 ntBASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 RNU2-56P-201ENST00000516826 190 ntBASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 RNU6-1198P-201ENST00000516904 67 ntBASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 MIR7853-201ENST00000584820 132 ntBASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 FKBP1AP1-201ENST00000594588 318 ntBASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 IMMP1LP3-201ENST00000604197 224 ntBASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 AC004467.1-201ENST00000615678 330 ntBASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 U73479.1-201ENST00000618062 168 ntBASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 AC138965.3-201ENST00000623875 498 ntBASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 AC091932.3-201ENST00000624223 323 ntBASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.39□□□□□ -1.55
PCDHB3Q9Y5E6 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 AC092376.2-201ENST00000622621 4116 ntBASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 RNA5SP326-201ENST00000363209 110 ntBASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 SNORD115-8-201ENST00000363856 82 ntBASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 SNORD115-38-201ENST00000365037 82 ntBASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 MIR130A-201ENST00000385274 89 ntBASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 RNU6-837P-201ENST00000391056 108 ntBASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 RNU6ATAC19P-201ENST00000408096 110 ntBASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 Z85995.1-201ENST00000415547 335 ntBASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 TMEM183AP1-205ENST00000432739 290 ntBASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 AL590399.6-201ENST00000446396 307 ntBASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 EIF4A1P11-201ENST00000451239 222 ntBASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 MTATP6P7-201ENST00000453315 681 ntBASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 ABCC13-202ENST00000463099 3842 ntBASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 RN7SL188P-201ENST00000469842 285 ntBASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 RPS20P22-201ENST00000473700 357 ntBASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 RNA5SP290-201ENST00000517133 127 ntBASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 SMILR-201ENST00000533992 553 ntTSL 4 BASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 AC122688.1-201ENST00000541494 223 ntBASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 AC010999.1-201ENST00000611856 324 ntBASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 AC039056.2-201ENST00000622261 511 ntBASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 AL354798.1-201ENST00000622505 329 ntBASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 SNORA43.4-201ENST00000629559 138 ntBASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PCDHB3Q9Y5E6 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
PCDHB3Q9Y5E6 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.37□□□□□ -1.55
PCDHB3Q9Y5E6 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
PCDHB3Q9Y5E6 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.37□□□□□ -1.55
PCDHB3Q9Y5E6 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.37□□□□□ -1.55
PCDHB3Q9Y5E6 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.37□□□□□ -1.55
PCDHB3Q9Y5E6 RNU6-142P-201ENST00000384019 107 ntBASIC5.37□□□□□ -1.55
PCDHB3Q9Y5E6 MIR937-201ENST00000401271 86 ntBASIC5.37□□□□□ -1.55
PCDHB3Q9Y5E6 MIR1302-4-201ENST00000408701 150 ntBASIC5.37□□□□□ -1.55
PCDHB3Q9Y5E6 AC006461.1-201ENST00000412637 326 ntBASIC5.37□□□□□ -1.55
PCDHB3Q9Y5E6 AC243964.1-201ENST00000441814 261 ntBASIC5.37□□□□□ -1.55
PCDHB3Q9Y5E6 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC5.37□□□□□ -1.55
PCDHB3Q9Y5E6 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.37□□□□□ -1.55
PCDHB3Q9Y5E6 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.37□□□□□ -1.55
PCDHB3Q9Y5E6 RNA5SP230-201ENST00000517039 122 ntBASIC5.37□□□□□ -1.55
PCDHB3Q9Y5E6 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC5.37□□□□□ -1.55
PCDHB3Q9Y5E6 AC016256.1-201ENST00000547971 354 ntBASIC5.37□□□□□ -1.55
PCDHB3Q9Y5E6 AC018448.1-201ENST00000552843 316 ntBASIC5.37□□□□□ -1.55
PCDHB3Q9Y5E6 MRPS21P7-201ENST00000566937 238 ntBASIC5.37□□□□□ -1.55
PCDHB3Q9Y5E6 MIR4660-201ENST00000583549 74 ntBASIC5.37□□□□□ -1.55
PCDHB3Q9Y5E6 AC099669.2-201ENST00000616549 437 ntBASIC5.37□□□□□ -1.55
PCDHB3Q9Y5E6 AF127577.6-201ENST00000623352 2191 ntBASIC5.37□□□□□ -1.55
PCDHB3Q9Y5E6 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
PCDHB3Q9Y5E6 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.37□□□□□ -1.55
PCDHB3Q9Y5E6 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
PCDHB3Q9Y5E6 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
PCDHB3Q9Y5E6 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 AC018529.3-201ENST00000624212 2254 ntBASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 114.1 ms