Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 RNA5SP99-201ENST00000364020 114 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 Y_RNA.238-201ENST00000364441 102 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 SNORA1.3-201ENST00000384676 136 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 MIR325-201ENST00000385260 98 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 RNU6-482P-201ENST00000391068 107 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 RPS3AP36-201ENST00000398190 775 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 RNA5SP425-201ENST00000410336 112 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 RNA5SP247-201ENST00000411181 105 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 AL513331.1-201ENST00000411908 397 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 NDUFB4P7-201ENST00000423198 363 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 NDUFB4P6-201ENST00000436819 366 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 MTCO1P19-201ENST00000443487 500 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 UQCRHP3-201ENST00000451503 251 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 SNORD97-201ENST00000459187 142 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 SNORA18.6-201ENST00000516792 115 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 RNU2-46P-201ENST00000517038 113 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 AC100870.1-201ENST00000522035 505 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 TRAV37-201ENST00000553906 342 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 AP005136.1-201ENST00000579765 429 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 AL358072.1-201ENST00000604156 575 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 AC093783.1-201ENST00000612976 329 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 AC004696.1-201ENST00000614345 607 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 RNU4-40P-201ENST00000364351 143 ntBASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 RNU6-701P-201ENST00000384059 107 ntBASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 RNU6ATAC15P-201ENST00000408279 121 ntBASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 RNU6-195P-201ENST00000411352 109 ntBASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 BX295541.1-201ENST00000417774 250 ntBASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 RAC1P6-201ENST00000423911 575 ntBASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 AC007283.2-201ENST00000424739 197 ntBASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 FCF1P1-201ENST00000432690 571 ntBASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 AC010153.1-201ENST00000432862 727 ntBASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 GAPDHP27-201ENST00000447427 1020 ntBASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 AC092185.1-201ENST00000491371 97 ntBASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 AC092436.1-201ENST00000506450 503 ntBASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 RNA5SP337-201ENST00000517007 109 ntBASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 AP003122.4-201ENST00000530980 758 ntBASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 NDUFAF4P1-201ENST00000559425 519 ntBASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 MIR3611-201ENST00000584484 83 ntBASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 AL589994.2-201ENST00000621124 579 ntBASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 AC027309.3-201ENST00000623419 351 ntBASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 AP003399.1-201ENST00000637534 361 ntBASIC3.18□□□□□ -1.9
ZNF541Q9H0D2 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 FARSBP1-201ENST00000435808 1778 ntBASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 AL390237.1-201ENST00000404226 1415 ntBASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 Y_RNA.51-201ENST00000362725 102 ntBASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 SNORA20.2-201ENST00000383922 131 ntBASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 RPL23AP32-201ENST00000395315 459 ntBASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 MTND4P25-201ENST00000441039 533 ntBASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 PIGFP3-201ENST00000441918 722 ntBASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 AC244505.5-201ENST00000443639 207 ntBASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 GAPDHP17-201ENST00000449858 1001 ntBASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 AL359385.1-201ENST00000456509 365 ntBASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 ARL2BPP4-201ENST00000506854 471 ntBASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 RN7SKP43-201ENST00000516173 320 ntBASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 RNU7-51P-201ENST00000516560 62 ntBASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 Vault.3-201ENST00000516676 95 ntBASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 NRON-201ENST00000517270 370 ntBASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 AL845331.3-202ENST00000562856 261 ntBASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 RSL24D1P11-201ENST00000591045 491 ntBASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 AC078899.3-201ENST00000599065 212 ntBASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 DPPA3P3-201ENST00000603842 430 ntBASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 AC090578.1-201ENST00000604955 591 ntBASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 AC080013.6-201ENST00000606185 215 ntBASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 AC006566.1-201ENST00000608943 513 ntBASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 AC107294.3-201ENST00000609211 526 ntBASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 AC072046.2-201ENST00000618366 268 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms