Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 TTC39CP1-201ENST00000512513 755 ntBASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 SNORA31.1-201ENST00000515993 133 ntBASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 SNORA31.5-201ENST00000516190 133 ntBASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 AC107016.2-201ENST00000547968 190 ntBASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 HMGB1P6-201ENST00000569046 646 ntBASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 GLUD1P4-201ENST00000590914 418 ntBASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 Z99129.1-201ENST00000612510 255 ntBASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 HULC.1-201ENST00000612720 240 ntBASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 AC006111.3-201ENST00000622137 383 ntBASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 FAM35BP-202ENST00000497389 3337 ntBASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 MAPK10-266ENST00000641066 6555 ntBASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 AL035425.3-201ENST00000564206 4996 ntBASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 AC073325.2-201ENST00000339545 159 ntBASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 RNU5A-6P-201ENST00000384136 116 ntBASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 Y_RNA.559-201ENST00000384686 107 ntBASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 AL139397.2-201ENST00000404529 772 ntBASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 RNU6ATAC16P-201ENST00000408591 138 ntBASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 RNA5SP293-201ENST00000410527 113 ntBASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 AC010975.2-201ENST00000427781 588 ntBASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 AC105272.1-201ENST00000438604 198 ntBASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 RPS24P13-201ENST00000442520 397 ntBASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 AC132479.1-201ENST00000449160 144 ntBASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 AC079448.1-201ENST00000449377 373 ntBASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 AL135752.1-201ENST00000479477 471 ntBASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 AC007182.2-201ENST00000489251 402 ntBASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 AL391840.1-201ENST00000571144 367 ntBASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 MIR3609-201ENST00000582661 80 ntBASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 AC104763.2-201ENST00000604179 382 ntBASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 HSPE1P7-201ENST00000604681 321 ntBASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 AL161734.1-201ENST00000609720 557 ntBASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 AC138649.3-201ENST00000622154 254 ntBASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC2.88□□□□□ -1.95
CCDC3Q9BQI4 AC010680.1-201ENST00000590024 3590 ntBASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 SNORA14A-201ENST00000364773 135 ntBASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 SMIM11P1-201ENST00000369586 178 ntBASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 OR5H15-201ENST00000383696 930 ntBASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 RNU6-217P-201ENST00000384164 104 ntBASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 RNU6-851P-201ENST00000384565 107 ntBASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 FGFR1OP2P1-201ENST00000395943 500 ntBASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 MTCO3P41-201ENST00000414801 328 ntBASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 AL139281.1-201ENST00000422120 335 ntBASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 AC007283.2-201ENST00000424739 197 ntBASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 ISCA1P1-201ENST00000426679 387 ntBASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 DNAJC19P4-201ENST00000440115 345 ntBASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 RNU6-953P-201ENST00000459154 107 ntBASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 KC877373.1-201ENST00000479066 408 ntBASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 RPL30P14-201ENST00000482744 348 ntBASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 RN7SL20P-201ENST00000488827 297 ntBASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 AC138853.1-201ENST00000503549 823 ntBASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 MTND2P33-201ENST00000506452 1031 ntBASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 AGGF1P4-201ENST00000568249 801 ntBASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 AC073648.5-201ENST00000603502 305 ntBASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 AC107294.3-201ENST00000609211 526 ntBASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 AC107294.1-201ENST00000609524 467 ntBASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 AP001486.3-201ENST00000615334 372 ntBASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC3Q9BQI4 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 Y_RNA.22-201ENST00000362492 102 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 RNU6-701P-201ENST00000384059 107 ntBASIC2.86□□□□□ -1.95
CCDC3Q9BQI4 RNU6-1035P-201ENST00000384477 107 ntBASIC2.86□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms