Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC015914.2-201ENST00000618167 288 ntBASIC3.83□□□□□ -1.8
CCDC140Q96MF4 MIR8062-201ENST00000621515 85 ntBASIC3.83□□□□□ -1.8
CCDC140Q96MF4 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC140Q96MF4 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.83□□□□□ -1.8
CCDC140Q96MF4 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.83□□□□□ -1.8
CCDC140Q96MF4 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC140Q96MF4 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.83□□□□□ -1.8
CCDC140Q96MF4 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
CCDC140Q96MF4 AC027290.2-201ENST00000623210 18662 ntBASIC3.82□□□□□ -1.8
CCDC140Q96MF4 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
CCDC140Q96MF4 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC140Q96MF4 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
CCDC140Q96MF4 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC140Q96MF4 RNA5SP305-201ENST00000362665 119 ntBASIC3.82□□□□□ -1.8
CCDC140Q96MF4 Y_RNA.476-201ENST00000384347 108 ntBASIC3.82□□□□□ -1.8
CCDC140Q96MF4 SNORA1.3-201ENST00000384676 136 ntBASIC3.82□□□□□ -1.8
CCDC140Q96MF4 AC093162.1-201ENST00000419682 124 ntBASIC3.82□□□□□ -1.8
CCDC140Q96MF4 BPY2DP-201ENST00000422208 265 ntBASIC3.82□□□□□ -1.8
CCDC140Q96MF4 RPL23AP82-202ENST00000427528 469 ntBASIC3.82□□□□□ -1.8
CCDC140Q96MF4 RPL21P40-201ENST00000428586 483 ntBASIC3.82□□□□□ -1.8
CCDC140Q96MF4 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC140Q96MF4 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC140Q96MF4 HMGN2P10-201ENST00000448085 265 ntBASIC3.82□□□□□ -1.8
CCDC140Q96MF4 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC3.82□□□□□ -1.8
CCDC140Q96MF4 snoU13.30-201ENST00000458951 104 ntBASIC3.82□□□□□ -1.8
CCDC140Q96MF4 RN7SL517P-201ENST00000462240 305 ntBASIC3.82□□□□□ -1.8
CCDC140Q96MF4 RPL30P14-201ENST00000482744 348 ntBASIC3.82□□□□□ -1.8
CCDC140Q96MF4 RPL30P1-201ENST00000488676 339 ntBASIC3.82□□□□□ -1.8
CCDC140Q96MF4 RPL23AP75-201ENST00000491601 451 ntBASIC3.82□□□□□ -1.8
CCDC140Q96MF4 AC020890.1-201ENST00000491837 504 ntBASIC3.82□□□□□ -1.8
CCDC140Q96MF4 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC140Q96MF4 AC074250.1-201ENST00000511117 192 ntBASIC3.82□□□□□ -1.8
CCDC140Q96MF4 RNU6-911P-201ENST00000516523 104 ntBASIC3.82□□□□□ -1.8
CCDC140Q96MF4 HMGN2P6-201ENST00000551091 273 ntBASIC3.82□□□□□ -1.8
CCDC140Q96MF4 MIR3668-201ENST00000582138 75 ntBASIC3.82□□□□□ -1.8
CCDC140Q96MF4 RPL23AP78-201ENST00000599928 470 ntBASIC3.82□□□□□ -1.8
CCDC140Q96MF4 AC087783.2-201ENST00000605070 562 ntBASIC3.82□□□□□ -1.8
CCDC140Q96MF4 MIR6076-201ENST00000617521 113 ntBASIC3.82□□□□□ -1.8
CCDC140Q96MF4 AP002799.1-201ENST00000623552 423 ntBASIC3.82□□□□□ -1.8
CCDC140Q96MF4 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC140Q96MF4 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC140Q96MF4 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC140Q96MF4 AP001148.1-201ENST00000624124 2359 ntBASIC3.82□□□□□ -1.8
CCDC140Q96MF4 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.82□□□□□ -1.8
CCDC140Q96MF4 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC140Q96MF4 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC140Q96MF4 AC007496.3-201ENST00000624987 3443 ntBASIC3.82□□□□□ -1.8
CCDC140Q96MF4 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
CCDC140Q96MF4 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC140Q96MF4 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC140Q96MF4 RLIMP1-201ENST00000339626 1680 ntBASIC3.81□□□□□ -1.8
CCDC140Q96MF4 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC140Q96MF4 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC140Q96MF4 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC3.81□□□□□ -1.8
CCDC140Q96MF4 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC140Q96MF4 OR14L1P-202ENST00000641545 3009 ntBASIC3.81□□□□□ -1.8
CCDC140Q96MF4 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC140Q96MF4 RNU6-770P-201ENST00000363929 105 ntBASIC3.81□□□□□ -1.8
CCDC140Q96MF4 U3.13-201ENST00000364804 214 ntBASIC3.81□□□□□ -1.8
CCDC140Q96MF4 RNU4-9P-201ENST00000364951 139 ntBASIC3.81□□□□□ -1.8
CCDC140Q96MF4 AL357515.1-201ENST00000402967 542 ntBASIC3.81□□□□□ -1.8
CCDC140Q96MF4 RPL23AP27-201ENST00000415161 451 ntBASIC3.81□□□□□ -1.8
CCDC140Q96MF4 TBCAP2-201ENST00000416175 326 ntBASIC3.81□□□□□ -1.8
CCDC140Q96MF4 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC140Q96MF4 AC000111.2-201ENST00000448200 210 ntBASIC3.81□□□□□ -1.8
CCDC140Q96MF4 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.81□□□□□ -1.8
CCDC140Q96MF4 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC140Q96MF4 AL445433.1-201ENST00000457507 257 ntBASIC3.81□□□□□ -1.8
CCDC140Q96MF4 U8.22-201ENST00000459141 133 ntBASIC3.81□□□□□ -1.8
CCDC140Q96MF4 RN7SL329P-201ENST00000467740 299 ntBASIC3.81□□□□□ -1.8
CCDC140Q96MF4 AC093270.2-201ENST00000486157 792 ntBASIC3.81□□□□□ -1.8
CCDC140Q96MF4 RN7SL97P-201ENST00000486780 299 ntBASIC3.81□□□□□ -1.8
CCDC140Q96MF4 RN7SL808P-201ENST00000496066 299 ntBASIC3.81□□□□□ -1.8
CCDC140Q96MF4 AC140172.1-201ENST00000502928 141 ntBASIC3.81□□□□□ -1.8
CCDC140Q96MF4 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.81□□□□□ -1.8
CCDC140Q96MF4 RNU6ATAC24P-201ENST00000516811 135 ntBASIC3.81□□□□□ -1.8
CCDC140Q96MF4 AC091144.1-201ENST00000519573 138 ntBASIC3.81□□□□□ -1.8
CCDC140Q96MF4 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC3.81□□□□□ -1.8
CCDC140Q96MF4 HSPE1P20-201ENST00000538133 289 ntBASIC3.81□□□□□ -1.8
CCDC140Q96MF4 CR383656.8-201ENST00000549046 145 ntBASIC3.81□□□□□ -1.8
CCDC140Q96MF4 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC140Q96MF4 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC140Q96MF4 AC010928.2-201ENST00000588017 287 ntBASIC3.81□□□□□ -1.8
CCDC140Q96MF4 AC019159.1-201ENST00000605094 187 ntBASIC3.81□□□□□ -1.8
CCDC140Q96MF4 AC062037.2-201ENST00000610137 73 ntBASIC3.81□□□□□ -1.8
CCDC140Q96MF4 AC107871.2-201ENST00000612894 502 ntBASIC3.81□□□□□ -1.8
CCDC140Q96MF4 DLEU2_2.2-201ENST00000615474 90 ntBASIC3.81□□□□□ -1.8
CCDC140Q96MF4 AC002076.2-201ENST00000617362 122 ntBASIC3.81□□□□□ -1.8
CCDC140Q96MF4 MIR3199-2-201ENST00000636243 86 ntBASIC3.81□□□□□ -1.8
CCDC140Q96MF4 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC140Q96MF4 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
CCDC140Q96MF4 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC3.81□□□□□ -1.8
CCDC140Q96MF4 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC140Q96MF4 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC140Q96MF4 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC140Q96MF4 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC140Q96MF4 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC140Q96MF4 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
CCDC140Q96MF4 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC3.81□□□□□ -1.8
CCDC140Q96MF4 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms