Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 MIR5583-1-201ENST00000580941 59 ntBASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 AL354984.3-201ENST00000604803 325 ntBASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 AL591034.3-201ENST00000605511 685 ntBASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 AC005014.2-201ENST00000607795 599 ntBASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 U4.1-201ENST00000620349 87 ntBASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 AC022418.1-201ENST00000624118 445 ntBASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
CLIP3Q96DZ5 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
CLIP3Q96DZ5 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.76
CLIP3Q96DZ5 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 Z82217.1-201ENST00000625157 8149 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 ZNF807-201ENST00000328088 1707 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 RNU6-1115P-201ENST00000362490 106 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 RNU1-14P-201ENST00000362759 152 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 RNU6-190P-201ENST00000384154 102 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 RNU1-44P-201ENST00000384453 163 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 SOD2P1-201ENST00000396543 562 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 AL139397.2-201ENST00000404529 772 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 AL591034.1-201ENST00000407447 340 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 RNU6ATAC16P-201ENST00000408591 138 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 RNU6-628P-201ENST00000410675 107 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 HMGB3P2-201ENST00000411913 584 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 AC018865.2-201ENST00000423631 129 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 COX6B1P7-201ENST00000430845 235 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 AL160004.2-201ENST00000432935 350 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 IGKV1OR-3-201ENST00000446944 348 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 PRDX3P3-201ENST00000447765 522 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 FABP5P13-201ENST00000452144 328 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 BTF3P15-201ENST00000455606 336 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 Y_RNA.653-201ENST00000459091 95 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 TRBV1-201ENST00000476502 284 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 AC026402.1-201ENST00000513642 170 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 RNA5SP291-201ENST00000517222 105 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 IGKV2-23-201ENST00000518729 323 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 AC008269.2-201ENST00000561915 1105 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 MIR4703-201ENST00000577728 79 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 MIR3672-201ENST00000584290 82 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 AC002546.1-201ENST00000588041 2504 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 VN1R85P-201ENST00000601587 426 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 Z82243.1-201ENST00000609432 473 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 AP001486.3-201ENST00000615334 372 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 MIR8059-201ENST00000620427 81 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 U6.114-201ENST00000636407 96 ntBASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
CLIP3Q96DZ5 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.07□□□□□ -1.76
CLIP3Q96DZ5 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
CLIP3Q96DZ5 API5P2-201ENST00000397055 1498 ntBASIC4.07□□□□□ -1.76
CLIP3Q96DZ5 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CLIP3Q96DZ5 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
CLIP3Q96DZ5 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CLIP3Q96DZ5 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CLIP3Q96DZ5 SPRR2C-201ENST00000290702 219 ntBASIC4.07□□□□□ -1.76
CLIP3Q96DZ5 Y_RNA.47-201ENST00000362697 108 ntBASIC4.07□□□□□ -1.76
CLIP3Q96DZ5 Y_RNA.212-201ENST00000364177 102 ntBASIC4.07□□□□□ -1.76
CLIP3Q96DZ5 RNU6-1032P-201ENST00000384100 107 ntBASIC4.07□□□□□ -1.76
CLIP3Q96DZ5 U1.1-201ENST00000384101 164 ntBASIC4.07□□□□□ -1.76
CLIP3Q96DZ5 UBE2V1P2-201ENST00000397758 440 ntBASIC4.07□□□□□ -1.76
CLIP3Q96DZ5 Y_RNA.618-201ENST00000410949 107 ntBASIC4.07□□□□□ -1.76
CLIP3Q96DZ5 OR6C66P-201ENST00000414917 930 ntBASIC4.07□□□□□ -1.76
CLIP3Q96DZ5 MCFD2P1-201ENST00000417812 300 ntBASIC4.07□□□□□ -1.76
CLIP3Q96DZ5 AL157831.1-201ENST00000426134 473 ntBASIC4.07□□□□□ -1.76
CLIP3Q96DZ5 AF228730.2-201ENST00000438784 848 ntBASIC4.07□□□□□ -1.76
CLIP3Q96DZ5 Z98949.2-201ENST00000440996 144 ntBASIC4.07□□□□□ -1.76
CLIP3Q96DZ5 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC4.07□□□□□ -1.76
CLIP3Q96DZ5 AL162151.2-201ENST00000448875 158 ntBASIC4.07□□□□□ -1.76
CLIP3Q96DZ5 AL162395.1-201ENST00000457882 422 ntBASIC4.07□□□□□ -1.76
CLIP3Q96DZ5 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
CLIP3Q96DZ5 Y_RNA.654-201ENST00000497848 106 ntBASIC4.07□□□□□ -1.76
CLIP3Q96DZ5 TRBVA-201ENST00000498804 316 ntBASIC4.07□□□□□ -1.76
CLIP3Q96DZ5 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC4.07□□□□□ -1.76
CLIP3Q96DZ5 RNA5SP454-201ENST00000517231 127 ntBASIC4.07□□□□□ -1.76
CLIP3Q96DZ5 AC009902.1-201ENST00000519351 183 ntBASIC4.07□□□□□ -1.76
CLIP3Q96DZ5 RANP9-201ENST00000519957 271 ntBASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms