Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC4.37□□□□□ -1.71
SMC1BQ8NDV3 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
SMC1BQ8NDV3 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
SMC1BQ8NDV3 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
SMC1BQ8NDV3 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC4.36□□□□□ -1.71
SMC1BQ8NDV3 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
SMC1BQ8NDV3 Y_RNA.166-201ENST00000363730 102 ntBASIC4.36□□□□□ -1.71
SMC1BQ8NDV3 RNU6-550P-201ENST00000391057 101 ntBASIC4.36□□□□□ -1.71
SMC1BQ8NDV3 AL592114.1-201ENST00000403842 483 ntBASIC4.36□□□□□ -1.71
SMC1BQ8NDV3 RNU6ATAC16P-201ENST00000408591 138 ntBASIC4.36□□□□□ -1.71
SMC1BQ8NDV3 MIR1183-201ENST00000408856 89 ntBASIC4.36□□□□□ -1.71
SMC1BQ8NDV3 RN7SKP140-201ENST00000411196 284 ntBASIC4.36□□□□□ -1.71
SMC1BQ8NDV3 RNA5SP111-201ENST00000411386 101 ntBASIC4.36□□□□□ -1.71
SMC1BQ8NDV3 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SMC1BQ8NDV3 MTND4P28-201ENST00000426217 387 ntBASIC4.36□□□□□ -1.71
SMC1BQ8NDV3 KCTD9P3-201ENST00000434597 1169 ntBASIC4.36□□□□□ -1.71
SMC1BQ8NDV3 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SMC1BQ8NDV3 AC078918.1-201ENST00000498515 228 ntBASIC4.36□□□□□ -1.71
SMC1BQ8NDV3 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.36□□□□□ -1.71
SMC1BQ8NDV3 RBBP4P6-201ENST00000508098 202 ntBASIC4.36□□□□□ -1.71
SMC1BQ8NDV3 AC017037.1-201ENST00000508460 471 ntBASIC4.36□□□□□ -1.71
SMC1BQ8NDV3 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC4.36□□□□□ -1.71
SMC1BQ8NDV3 RNU6-237P-201ENST00000515985 71 ntBASIC4.36□□□□□ -1.71
SMC1BQ8NDV3 RNU6-123P-201ENST00000516163 102 ntBASIC4.36□□□□□ -1.71
SMC1BQ8NDV3 BTF3P12-201ENST00000519620 469 ntBASIC4.36□□□□□ -1.71
SMC1BQ8NDV3 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC4.36□□□□□ -1.71
SMC1BQ8NDV3 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.36□□□□□ -1.71
SMC1BQ8NDV3 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC4.36□□□□□ -1.71
SMC1BQ8NDV3 AP001330.4-201ENST00000604350 154 ntBASIC4.36□□□□□ -1.71
SMC1BQ8NDV3 FAM35DP-201ENST00000323387 2712 ntBASIC4.36□□□□□ -1.71
SMC1BQ8NDV3 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SMC1BQ8NDV3 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.36□□□□□ -1.71
SMC1BQ8NDV3 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 Y_RNA.61-201ENST00000362835 102 ntBASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 CRP-203ENST00000368111 512 ntTSL 3 BASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 RNU6-116P-201ENST00000384042 109 ntBASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 RN7SKP32-201ENST00000410167 303 ntBASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 Y_RNA.615-201ENST00000410769 117 ntBASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 AL365400.1-201ENST00000431854 640 ntBASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 RPL37P6-201ENST00000460682 294 ntBASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 AL049874.1-201ENST00000489560 388 ntBASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 AL359273.1-201ENST00000510918 627 ntBASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 PANCR-202ENST00000513690 448 ntTSL 2 BASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 Y_RNA.689-201ENST00000516589 107 ntBASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 RNU6-1314P-201ENST00000517139 104 ntBASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 AC087241.2-201ENST00000535801 324 ntBASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 MIR3921-201ENST00000577308 85 ntBASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 C8orf59P2-201ENST00000603441 271 ntBASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 AC104662.1-201ENST00000604448 511 ntBASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 AP002826.1-201ENST00000608835 315 ntBASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 AL355810.1-201ENST00000614629 552 ntBASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 AC009248.2-201ENST00000619826 254 ntBASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 AP001486.2-201ENST00000561652 5113 ntBASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SMC1BQ8NDV3 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.34□□□□□ -1.71
SMC1BQ8NDV3 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SMC1BQ8NDV3 Y_RNA.356-201ENST00000365475 113 ntBASIC4.34□□□□□ -1.71
SMC1BQ8NDV3 MIR1290-201ENST00000408735 78 ntBASIC4.34□□□□□ -1.71
SMC1BQ8NDV3 AL513331.1-201ENST00000411908 397 ntBASIC4.34□□□□□ -1.71
SMC1BQ8NDV3 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.34□□□□□ -1.71
SMC1BQ8NDV3 AL451054.2-201ENST00000420896 202 ntBASIC4.34□□□□□ -1.71
SMC1BQ8NDV3 MTCO3P46-201ENST00000425787 232 ntBASIC4.34□□□□□ -1.71
SMC1BQ8NDV3 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC4.34□□□□□ -1.71
SMC1BQ8NDV3 AL590639.1-201ENST00000456484 337 ntBASIC4.34□□□□□ -1.71
SMC1BQ8NDV3 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC4.34□□□□□ -1.71
SMC1BQ8NDV3 AC093663.1-201ENST00000497190 394 ntBASIC4.34□□□□□ -1.71
SMC1BQ8NDV3 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC4.34□□□□□ -1.71
SMC1BQ8NDV3 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC4.34□□□□□ -1.71
SMC1BQ8NDV3 SNORA31.3-201ENST00000516029 96 ntBASIC4.34□□□□□ -1.71
SMC1BQ8NDV3 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.34□□□□□ -1.71
SMC1BQ8NDV3 SNORA70.18-201ENST00000516696 98 ntBASIC4.34□□□□□ -1.71
SMC1BQ8NDV3 NARSP2-201ENST00000518524 679 ntBASIC4.34□□□□□ -1.71
SMC1BQ8NDV3 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC4.34□□□□□ -1.71
SMC1BQ8NDV3 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC4.34□□□□□ -1.71
SMC1BQ8NDV3 PSMA3P-201ENST00000555485 635 ntBASIC4.34□□□□□ -1.71
SMC1BQ8NDV3 MED28P6-201ENST00000558776 231 ntBASIC4.34□□□□□ -1.71
SMC1BQ8NDV3 AC005668.1-201ENST00000571142 476 ntBASIC4.34□□□□□ -1.71
SMC1BQ8NDV3 MIR4644-201ENST00000579929 84 ntBASIC4.34□□□□□ -1.71
SMC1BQ8NDV3 VN1R80P-201ENST00000597126 338 ntBASIC4.34□□□□□ -1.71
SMC1BQ8NDV3 AL117336.2-201ENST00000602435 335 ntBASIC4.34□□□□□ -1.71
SMC1BQ8NDV3 AL033523.1-201ENST00000605153 153 ntBASIC4.34□□□□□ -1.71
SMC1BQ8NDV3 MTND5P42-201ENST00000637720 498 ntBASIC4.34□□□□□ -1.71
SMC1BQ8NDV3 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
SMC1BQ8NDV3 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.34□□□□□ -1.72
SMC1BQ8NDV3 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.72
SMC1BQ8NDV3 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.34□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms