Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC004866.2-201ENST00000438285 481 ntBASIC3.92□□□□□ -1.78
MSX2P35548 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC3.92□□□□□ -1.78
MSX2P35548 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.92□□□□□ -1.78
MSX2P35548 AC008264.1-201ENST00000447612 367 ntBASIC3.92□□□□□ -1.78
MSX2P35548 CECR9-201ENST00000453421 199 ntBASIC3.92□□□□□ -1.78
MSX2P35548 USP9YP23-201ENST00000455085 407 ntBASIC3.92□□□□□ -1.78
MSX2P35548 AC010655.3-201ENST00000478818 450 ntBASIC3.92□□□□□ -1.78
MSX2P35548 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC3.92□□□□□ -1.78
MSX2P35548 MRPS35P2-201ENST00000508242 191 ntBASIC3.92□□□□□ -1.78
MSX2P35548 SNORA31.3-201ENST00000516029 96 ntBASIC3.92□□□□□ -1.78
MSX2P35548 RNU6-677P-201ENST00000516914 101 ntBASIC3.92□□□□□ -1.78
MSX2P35548 SNORD116.3-201ENST00000517176 78 ntBASIC3.92□□□□□ -1.78
MSX2P35548 AC009812.2-201ENST00000517657 457 ntBASIC3.92□□□□□ -1.78
MSX2P35548 AC091516.1-201ENST00000549191 703 ntBASIC3.92□□□□□ -1.78
MSX2P35548 AC025423.5-201ENST00000550230 219 ntBASIC3.92□□□□□ -1.78
MSX2P35548 AC126177.3-201ENST00000551839 688 ntBASIC3.92□□□□□ -1.78
MSX2P35548 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.92□□□□□ -1.78
MSX2P35548 MYL12BP1-201ENST00000569826 507 ntBASIC3.92□□□□□ -1.78
MSX2P35548 MIR4270-201ENST00000581799 70 ntBASIC3.92□□□□□ -1.78
MSX2P35548 AC012119.1-201ENST00000603184 222 ntBASIC3.92□□□□□ -1.78
MSX2P35548 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
MSX2P35548 MIR486-1-201ENST00000612171 68 ntBASIC3.92□□□□□ -1.78
MSX2P35548 MPP6-209ENST00000625307 126 ntTSL 5 BASIC3.92□□□□□ -1.78
MSX2P35548 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
MSX2P35548 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
MSX2P35548 Z82217.1-201ENST00000625157 8149 ntBASIC3.92□□□□□ -1.78
MSX2P35548 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.91□□□□□ -1.78
MSX2P35548 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
MSX2P35548 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
MSX2P35548 SDAD1P1-202ENST00000524156 2051 ntBASIC3.91□□□□□ -1.78
MSX2P35548 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.91□□□□□ -1.78
MSX2P35548 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
MSX2P35548 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
MSX2P35548 SNORD113.2-201ENST00000364166 89 ntBASIC3.91□□□□□ -1.78
MSX2P35548 SNORA7.2-201ENST00000364446 145 ntBASIC3.91□□□□□ -1.78
MSX2P35548 RNU6-1303P-201ENST00000364841 107 ntBASIC3.91□□□□□ -1.78
MSX2P35548 RNA5SP235-201ENST00000365411 114 ntBASIC3.91□□□□□ -1.78
MSX2P35548 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
MSX2P35548 Y_RNA.428-201ENST00000384078 102 ntBASIC3.91□□□□□ -1.78
MSX2P35548 RNU6-842P-201ENST00000384269 107 ntBASIC3.91□□□□□ -1.78
MSX2P35548 Y_RNA.476-201ENST00000384347 108 ntBASIC3.91□□□□□ -1.78
MSX2P35548 RNU6-45P-201ENST00000384471 107 ntBASIC3.91□□□□□ -1.78
MSX2P35548 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
MSX2P35548 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
MSX2P35548 MIR298-201ENST00000401212 88 ntBASIC3.91□□□□□ -1.78
MSX2P35548 RNA5SP36-201ENST00000410197 133 ntBASIC3.91□□□□□ -1.78
MSX2P35548 CYP4F29P-201ENST00000420685 446 ntBASIC3.91□□□□□ -1.78
MSX2P35548 DPH3P2-201ENST00000422618 250 ntBASIC3.91□□□□□ -1.78
MSX2P35548 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC3.91□□□□□ -1.78
MSX2P35548 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC3.91□□□□□ -1.78
MSX2P35548 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC3.91□□□□□ -1.78
MSX2P35548 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC3.91□□□□□ -1.78
MSX2P35548 snoU13.24-201ENST00000458998 104 ntBASIC3.91□□□□□ -1.78
MSX2P35548 AC109327.1-201ENST00000471666 403 ntBASIC3.91□□□□□ -1.78
MSX2P35548 AC092436.3-201ENST00000511788 257 ntBASIC3.91□□□□□ -1.78
MSX2P35548 AC023141.12-201ENST00000512399 199 ntBASIC3.91□□□□□ -1.78
MSX2P35548 Y_RNA.668-201ENST00000516233 93 ntBASIC3.91□□□□□ -1.78
MSX2P35548 RNU6-264P-201ENST00000517134 104 ntBASIC3.91□□□□□ -1.78
MSX2P35548 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.91□□□□□ -1.78
MSX2P35548 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC3.91□□□□□ -1.78
MSX2P35548 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.91□□□□□ -1.78
MSX2P35548 GNRHR2P1-201ENST00000555315 631 ntBASIC3.91□□□□□ -1.78
MSX2P35548 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC3.91□□□□□ -1.78
MSX2P35548 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.91□□□□□ -1.78
MSX2P35548 AC092447.9-201ENST00000603395 144 ntBASIC3.91□□□□□ -1.78
MSX2P35548 AC008745.1-201ENST00000604064 271 ntBASIC3.91□□□□□ -1.78
MSX2P35548 AC002044.1-201ENST00000606707 158 ntBASIC3.91□□□□□ -1.78
MSX2P35548 AC107871.2-201ENST00000612894 502 ntBASIC3.91□□□□□ -1.78
MSX2P35548 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC3.91□□□□□ -1.78
MSX2P35548 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.91□□□□□ -1.78
MSX2P35548 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
MSX2P35548 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
MSX2P35548 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
MSX2P35548 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
MSX2P35548 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.9□□□□□ -1.78
MSX2P35548 AL365440.1-201ENST00000436135 2167 ntBASIC3.9□□□□□ -1.78
MSX2P35548 AC138393.1-203ENST00000327086 343 ntBASIC3.9□□□□□ -1.79
MSX2P35548 SNORA31-201ENST00000362607 130 ntBASIC3.9□□□□□ -1.79
MSX2P35548 RNU6-266P-201ENST00000364225 107 ntBASIC3.9□□□□□ -1.79
MSX2P35548 RNA5SP87-201ENST00000384155 118 ntBASIC3.9□□□□□ -1.79
MSX2P35548 SNORA11F-201ENST00000408237 128 ntBASIC3.9□□□□□ -1.79
MSX2P35548 RNU6-847P-201ENST00000411115 108 ntBASIC3.9□□□□□ -1.79
MSX2P35548 AL590139.1-201ENST00000416267 400 ntBASIC3.9□□□□□ -1.79
MSX2P35548 C4BPAP2-201ENST00000428434 478 ntBASIC3.9□□□□□ -1.79
MSX2P35548 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.9□□□□□ -1.79
MSX2P35548 AL645568.3-201ENST00000433683 316 ntBASIC3.9□□□□□ -1.79
MSX2P35548 AC091390.1-201ENST00000433904 331 ntBASIC3.9□□□□□ -1.79
MSX2P35548 AL132765.1-201ENST00000434165 553 ntBASIC3.9□□□□□ -1.79
MSX2P35548 Z98949.2-201ENST00000440996 144 ntBASIC3.9□□□□□ -1.79
MSX2P35548 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC3.9□□□□□ -1.79
MSX2P35548 AC010326.1-201ENST00000462726 602 ntBASIC3.9□□□□□ -1.79
MSX2P35548 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
MSX2P35548 AC084198.1-201ENST00000477747 402 ntBASIC3.9□□□□□ -1.79
MSX2P35548 RPL31P13-201ENST00000484151 370 ntBASIC3.9□□□□□ -1.79
MSX2P35548 AF213884.1-201ENST00000488102 463 ntBASIC3.9□□□□□ -1.79
MSX2P35548 RPS27AP13-201ENST00000498403 237 ntBASIC3.9□□□□□ -1.79
MSX2P35548 BTF3L4P4-201ENST00000506381 449 ntBASIC3.9□□□□□ -1.79
MSX2P35548 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC3.9□□□□□ -1.79
MSX2P35548 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC3.9□□□□□ -1.79
MSX2P35548 AC026726.1-201ENST00000512859 601 ntBASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms