Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 DEFB108F-201ENST00000344638 222 ntBASIC3.59□□□□□ -1.83
CIITAP33076 RNU5E-6P-201ENST00000365574 115 ntBASIC3.59□□□□□ -1.83
CIITAP33076 RNU6-877P-201ENST00000383868 107 ntBASIC3.59□□□□□ -1.83
CIITAP33076 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
CIITAP33076 AL109755.1-201ENST00000401791 649 ntBASIC3.59□□□□□ -1.83
CIITAP33076 AL591416.1-201ENST00000404015 867 ntBASIC3.59□□□□□ -1.83
CIITAP33076 RNU6-1068P-201ENST00000410958 103 ntBASIC3.59□□□□□ -1.83
CIITAP33076 ZNF90P2-204ENST00000419323 1075 ntBASIC3.59□□□□□ -1.83
CIITAP33076 AC018630.2-202ENST00000422992 927 ntBASIC3.59□□□□□ -1.83
CIITAP33076 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC3.59□□□□□ -1.83
CIITAP33076 AC079780.1-201ENST00000428259 207 ntBASIC3.59□□□□□ -1.83
CIITAP33076 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC3.59□□□□□ -1.83
CIITAP33076 AC140076.1-201ENST00000449897 361 ntBASIC3.59□□□□□ -1.83
CIITAP33076 AC115115.1-201ENST00000449927 248 ntBASIC3.59□□□□□ -1.83
CIITAP33076 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC3.59□□□□□ -1.83
CIITAP33076 AL356010.1-201ENST00000456364 102 ntBASIC3.59□□□□□ -1.83
CIITAP33076 RNU6-261P-201ENST00000459506 102 ntBASIC3.59□□□□□ -1.83
CIITAP33076 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.59□□□□□ -1.83
CIITAP33076 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.59□□□□□ -1.83
CIITAP33076 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.59□□□□□ -1.83
CIITAP33076 HMGB1P41-201ENST00000520234 440 ntBASIC3.59□□□□□ -1.83
CIITAP33076 AC104027.1-201ENST00000521887 300 ntBASIC3.59□□□□□ -1.83
CIITAP33076 FAM60DP-201ENST00000524174 632 ntBASIC3.59□□□□□ -1.83
CIITAP33076 OR5BN1P-201ENST00000532955 829 ntBASIC3.59□□□□□ -1.83
CIITAP33076 AC123904.3-201ENST00000547218 814 ntBASIC3.59□□□□□ -1.83
CIITAP33076 AC004024.1-201ENST00000549244 247 ntBASIC3.59□□□□□ -1.83
CIITAP33076 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC3.59□□□□□ -1.83
CIITAP33076 MED28P6-201ENST00000558776 231 ntBASIC3.59□□□□□ -1.83
CIITAP33076 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.59□□□□□ -1.83
CIITAP33076 AC055876.1-202ENST00000567053 138 ntBASIC3.59□□□□□ -1.83
CIITAP33076 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.59□□□□□ -1.83
CIITAP33076 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.59□□□□□ -1.83
CIITAP33076 TUG1_2.1-201ENST00000614234 87 ntBASIC3.59□□□□□ -1.83
CIITAP33076 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC3.59□□□□□ -1.83
CIITAP33076 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.59□□□□□ -1.83
CIITAP33076 MIR622-201ENST00000638396 96 ntBASIC3.59□□□□□ -1.83
CIITAP33076 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
CIITAP33076 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
CIITAP33076 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.59□□□□□ -1.84
CIITAP33076 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
CIITAP33076 RNA5SP374-201ENST00000362939 125 ntBASIC3.58□□□□□ -1.84
CIITAP33076 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
CIITAP33076 RNU6-606P-201ENST00000384721 111 ntBASIC3.58□□□□□ -1.84
CIITAP33076 AL354719.1-201ENST00000406535 843 ntBASIC3.58□□□□□ -1.84
CIITAP33076 SNRPEP10-201ENST00000420249 274 ntBASIC3.58□□□□□ -1.84
CIITAP33076 RPS15AP6-201ENST00000420703 385 ntBASIC3.58□□□□□ -1.84
CIITAP33076 RPL31P12-201ENST00000422587 358 ntBASIC3.58□□□□□ -1.84
CIITAP33076 MED13P1-201ENST00000428342 171 ntBASIC3.58□□□□□ -1.84
CIITAP33076 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.58□□□□□ -1.84
CIITAP33076 BNIP3P2-201ENST00000441221 577 ntBASIC3.58□□□□□ -1.84
CIITAP33076 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC3.58□□□□□ -1.84
CIITAP33076 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC3.58□□□□□ -1.84
CIITAP33076 AL162389.1-201ENST00000449233 177 ntBASIC3.58□□□□□ -1.84
CIITAP33076 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC3.58□□□□□ -1.84
CIITAP33076 AC006539.3-201ENST00000454258 129 ntBASIC3.58□□□□□ -1.84
CIITAP33076 AC022364.2-201ENST00000457963 554 ntBASIC3.58□□□□□ -1.84
CIITAP33076 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.58□□□□□ -1.84
CIITAP33076 AC098799.2-201ENST00000509466 868 ntBASIC3.58□□□□□ -1.84
CIITAP33076 RNA5SP401-201ENST00000515920 127 ntBASIC3.58□□□□□ -1.84
CIITAP33076 RNU6-507P-201ENST00000516045 100 ntBASIC3.58□□□□□ -1.84
CIITAP33076 RNU2-10P-201ENST00000516375 211 ntBASIC3.58□□□□□ -1.84
CIITAP33076 AC100870.1-201ENST00000522035 505 ntBASIC3.58□□□□□ -1.84
CIITAP33076 AF235103.2-201ENST00000525753 346 ntBASIC3.58□□□□□ -1.84
CIITAP33076 AC011979.2-201ENST00000527568 352 ntBASIC3.58□□□□□ -1.84
CIITAP33076 AP001646.1-201ENST00000527936 915 ntBASIC3.58□□□□□ -1.84
CIITAP33076 OR4R1P-201ENST00000529879 463 ntBASIC3.58□□□□□ -1.84
CIITAP33076 OR5B19P-201ENST00000531766 928 ntBASIC3.58□□□□□ -1.84
CIITAP33076 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
CIITAP33076 HIF1AP1-201ENST00000553642 175 ntBASIC3.58□□□□□ -1.84
CIITAP33076 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC3.58□□□□□ -1.84
CIITAP33076 AC024619.4-201ENST00000580924 316 ntBASIC3.58□□□□□ -1.84
CIITAP33076 AL357078.3-201ENST00000607528 618 ntBASIC3.58□□□□□ -1.84
CIITAP33076 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.58□□□□□ -1.84
CIITAP33076 AC024940.5-201ENST00000622889 474 ntBASIC3.58□□□□□ -1.84
CIITAP33076 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
CIITAP33076 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
CIITAP33076 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.57□□□□□ -1.84
CIITAP33076 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CIITAP33076 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.57□□□□□ -1.84
CIITAP33076 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.57□□□□□ -1.84
CIITAP33076 Y_RNA.70-201ENST00000362886 110 ntBASIC3.57□□□□□ -1.84
CIITAP33076 RNU4-48P-201ENST00000365559 182 ntBASIC3.57□□□□□ -1.84
CIITAP33076 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CIITAP33076 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
CIITAP33076 RNU6-876P-201ENST00000391295 104 ntBASIC3.57□□□□□ -1.84
CIITAP33076 RPS3AP24-201ENST00000407896 734 ntBASIC3.57□□□□□ -1.84
CIITAP33076 OR9R1P-201ENST00000412200 877 ntBASIC3.57□□□□□ -1.84
CIITAP33076 OR51A5P-201ENST00000415429 942 ntBASIC3.57□□□□□ -1.84
CIITAP33076 UBE2FP1-201ENST00000416536 447 ntBASIC3.57□□□□□ -1.84
CIITAP33076 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CIITAP33076 PPP1R11P2-201ENST00000423543 382 ntBASIC3.57□□□□□ -1.84
CIITAP33076 RPS3AP12-201ENST00000443616 753 ntBASIC3.57□□□□□ -1.84
CIITAP33076 MTND5P20-201ENST00000448677 143 ntBASIC3.57□□□□□ -1.84
CIITAP33076 SSXP4-201ENST00000451349 245 ntBASIC3.57□□□□□ -1.84
CIITAP33076 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.57□□□□□ -1.84
CIITAP33076 RPS27AP1-201ENST00000475545 471 ntBASIC3.57□□□□□ -1.84
CIITAP33076 AC126389.1-201ENST00000477436 290 ntBASIC3.57□□□□□ -1.84
CIITAP33076 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.57□□□□□ -1.84
CIITAP33076 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.57□□□□□ -1.84
CIITAP33076 RPL39P36-201ENST00000490784 156 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms