Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 Y_RNA.9-201ENST00000362354 101 ntBASIC3.04□□□□□ -1.92
MSH3P20585 RNU6-1085P-201ENST00000363576 107 ntBASIC3.04□□□□□ -1.92
MSH3P20585 MIR1-2-201ENST00000384961 85 ntBASIC3.04□□□□□ -1.92
MSH3P20585 RPS4XP8-201ENST00000402039 771 ntBASIC3.04□□□□□ -1.92
MSH3P20585 U3.42-201ENST00000408746 214 ntBASIC3.04□□□□□ -1.92
MSH3P20585 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.04□□□□□ -1.92
MSH3P20585 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
MSH3P20585 MTCYBP5-201ENST00000423752 1135 ntBASIC3.04□□□□□ -1.92
MSH3P20585 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.04□□□□□ -1.92
MSH3P20585 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.04□□□□□ -1.92
MSH3P20585 AC008850.1-201ENST00000427546 362 ntBASIC3.04□□□□□ -1.92
MSH3P20585 MTATP6P16-201ENST00000434543 526 ntBASIC3.04□□□□□ -1.92
MSH3P20585 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC3.04□□□□□ -1.92
MSH3P20585 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC3.04□□□□□ -1.92
MSH3P20585 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.04□□□□□ -1.92
MSH3P20585 MTND2P24-201ENST00000453434 806 ntBASIC3.04□□□□□ -1.92
MSH3P20585 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.04□□□□□ -1.92
MSH3P20585 AC022364.2-201ENST00000457963 554 ntBASIC3.04□□□□□ -1.92
MSH3P20585 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.04□□□□□ -1.92
MSH3P20585 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.04□□□□□ -1.92
MSH3P20585 AC026427.2-201ENST00000506228 536 ntBASIC3.04□□□□□ -1.92
MSH3P20585 RNU6-718P-201ENST00000516166 105 ntBASIC3.04□□□□□ -1.92
MSH3P20585 RN7SKP43-201ENST00000516173 320 ntBASIC3.04□□□□□ -1.92
MSH3P20585 RNU6-390P-201ENST00000516259 103 ntBASIC3.04□□□□□ -1.92
MSH3P20585 SNORD27.1-201ENST00000516319 72 ntBASIC3.04□□□□□ -1.92
MSH3P20585 Y_RNA.693-201ENST00000516641 110 ntBASIC3.04□□□□□ -1.92
MSH3P20585 RNU6-1092P-201ENST00000516955 87 ntBASIC3.04□□□□□ -1.92
MSH3P20585 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC3.04□□□□□ -1.92
MSH3P20585 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC3.04□□□□□ -1.92
MSH3P20585 OR5AQ1P-201ENST00000527596 927 ntBASIC3.04□□□□□ -1.92
MSH3P20585 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.04□□□□□ -1.92
MSH3P20585 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.04□□□□□ -1.92
MSH3P20585 AC055876.1-202ENST00000567053 138 ntBASIC3.04□□□□□ -1.92
MSH3P20585 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.04□□□□□ -1.92
MSH3P20585 AC005951.2-201ENST00000576282 495 ntBASIC3.04□□□□□ -1.92
MSH3P20585 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.04□□□□□ -1.92
MSH3P20585 AC007363.1-201ENST00000604736 620 ntBASIC3.04□□□□□ -1.92
MSH3P20585 AL121992.2-201ENST00000606262 256 ntBASIC3.04□□□□□ -1.92
MSH3P20585 SDR42E1P2-201ENST00000614861 481 ntBASIC3.04□□□□□ -1.92
MSH3P20585 AC010133.1-201ENST00000615809 842 ntBASIC3.04□□□□□ -1.92
MSH3P20585 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
MSH3P20585 AC093831.2-201ENST00000624393 3427 ntBASIC3.04□□□□□ -1.92
MSH3P20585 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.04□□□□□ -1.92
MSH3P20585 AC103988.1-201ENST00000566382 2177 ntBASIC3.04□□□□□ -1.92
MSH3P20585 MTND5P7-201ENST00000413558 1798 ntBASIC3.03□□□□□ -1.92
MSH3P20585 MIR22-201ENST00000362190 85 ntBASIC3.03□□□□□ -1.92
MSH3P20585 RNY4P14-201ENST00000363656 96 ntBASIC3.03□□□□□ -1.92
MSH3P20585 RNU4-12P-201ENST00000365233 139 ntBASIC3.03□□□□□ -1.92
MSH3P20585 Y_RNA.367-201ENST00000365544 101 ntBASIC3.03□□□□□ -1.92
MSH3P20585 Y_RNA.450-201ENST00000384198 113 ntBASIC3.03□□□□□ -1.92
MSH3P20585 SNORD115-47-201ENST00000391226 86 ntBASIC3.03□□□□□ -1.92
MSH3P20585 AL354719.1-201ENST00000406535 843 ntBASIC3.03□□□□□ -1.92
MSH3P20585 BTF3P7-201ENST00000407097 488 ntBASIC3.03□□□□□ -1.92
MSH3P20585 AC018630.2-202ENST00000422992 927 ntBASIC3.03□□□□□ -1.92
MSH3P20585 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.03□□□□□ -1.92
MSH3P20585 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.03□□□□□ -1.92
MSH3P20585 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3.03□□□□□ -1.92
MSH3P20585 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.03□□□□□ -1.92
MSH3P20585 AC244505.4-201ENST00000434905 287 ntBASIC3.03□□□□□ -1.92
MSH3P20585 HMGB3P12-201ENST00000438745 556 ntBASIC3.03□□□□□ -1.92
MSH3P20585 SSXP5-201ENST00000443473 287 ntBASIC3.03□□□□□ -1.92
MSH3P20585 MTATP6P30-201ENST00000443540 664 ntBASIC3.03□□□□□ -1.92
MSH3P20585 RPS26P21-201ENST00000475397 348 ntBASIC3.03□□□□□ -1.92
MSH3P20585 HMGN2P13-201ENST00000476476 274 ntBASIC3.03□□□□□ -1.92
MSH3P20585 AC126389.1-201ENST00000477436 290 ntBASIC3.03□□□□□ -1.92
MSH3P20585 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
MSH3P20585 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.03□□□□□ -1.92
MSH3P20585 RN7SKP282-201ENST00000516824 299 ntBASIC3.03□□□□□ -1.92
MSH3P20585 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.03□□□□□ -1.92
MSH3P20585 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC3.03□□□□□ -1.92
MSH3P20585 AC104383.1-201ENST00000530297 370 ntBASIC3.03□□□□□ -1.92
MSH3P20585 AL512310.1-201ENST00000548639 172 ntBASIC3.03□□□□□ -1.92
MSH3P20585 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.03□□□□□ -1.92
MSH3P20585 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.03□□□□□ -1.92
MSH3P20585 AP001596.2-201ENST00000608410 312 ntBASIC3.03□□□□□ -1.92
MSH3P20585 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.03□□□□□ -1.92
MSH3P20585 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.92
MSH3P20585 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
MSH3P20585 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC3.03□□□□□ -1.92
MSH3P20585 ZNF680P1-201ENST00000436625 1469 ntBASIC3.03□□□□□ -1.93
MSH3P20585 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.03□□□□□ -1.93
MSH3P20585 MTND5P19-201ENST00000424872 1794 ntBASIC3.02□□□□□ -1.93
MSH3P20585 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
MSH3P20585 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.02□□□□□ -1.93
MSH3P20585 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.02□□□□□ -1.93
MSH3P20585 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.02□□□□□ -1.93
MSH3P20585 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
MSH3P20585 AC073343.1-201ENST00000328239 651 ntBASIC3.02□□□□□ -1.93
MSH3P20585 MIR422A-201ENST00000362286 90 ntBASIC3.02□□□□□ -1.93
MSH3P20585 RNU5A-1-201ENST00000362698 116 ntBASIC3.02□□□□□ -1.93
MSH3P20585 RNU6-188P-201ENST00000364207 107 ntBASIC3.02□□□□□ -1.93
MSH3P20585 SNORA71.1-201ENST00000364523 117 ntBASIC3.02□□□□□ -1.93
MSH3P20585 SNORA51.4-201ENST00000364993 124 ntBASIC3.02□□□□□ -1.93
MSH3P20585 Y_RNA.481-201ENST00000384373 102 ntBASIC3.02□□□□□ -1.93
MSH3P20585 AC068050.1-201ENST00000394891 380 ntBASIC3.02□□□□□ -1.93
MSH3P20585 SNORA11.1-201ENST00000408133 129 ntBASIC3.02□□□□□ -1.93
MSH3P20585 RNA5SP274-201ENST00000410484 108 ntBASIC3.02□□□□□ -1.93
MSH3P20585 RNU2-39P-201ENST00000410604 198 ntBASIC3.02□□□□□ -1.93
MSH3P20585 RN7SKP58-201ENST00000411010 305 ntBASIC3.02□□□□□ -1.93
MSH3P20585 BMS1P22-201ENST00000414726 313 ntBASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 135.7 ms