Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC104651.1-201ENST00000427559 735 ntBASIC2.44□□□□□ -2.02
SDC1P18827 HMGB3P12-201ENST00000438745 556 ntBASIC2.44□□□□□ -2.02
SDC1P18827 WASF1P1-201ENST00000447560 1131 ntBASIC2.44□□□□□ -2.02
SDC1P18827 FABP5P15-201ENST00000453566 214 ntBASIC2.44□□□□□ -2.02
SDC1P18827 SNRPGP9-201ENST00000456025 225 ntBASIC2.44□□□□□ -2.02
SDC1P18827 MTND1P3-201ENST00000484956 952 ntBASIC2.44□□□□□ -2.02
SDC1P18827 RPS27P26-201ENST00000494583 239 ntBASIC2.44□□□□□ -2.02
SDC1P18827 RPS27P27-201ENST00000498779 255 ntBASIC2.44□□□□□ -2.02
SDC1P18827 SUMO2P6-201ENST00000505273 288 ntBASIC2.44□□□□□ -2.02
SDC1P18827 Y_RNA.672-201ENST00000516289 104 ntBASIC2.44□□□□□ -2.02
SDC1P18827 SNORA70.24-201ENST00000517233 118 ntBASIC2.44□□□□□ -2.02
SDC1P18827 HMGB1P41-201ENST00000520234 440 ntBASIC2.44□□□□□ -2.02
SDC1P18827 MTCO1P47-201ENST00000523889 1271 ntBASIC2.44□□□□□ -2.02
SDC1P18827 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC2.44□□□□□ -2.02
SDC1P18827 AL359212.1-201ENST00000556608 614 ntBASIC2.44□□□□□ -2.02
SDC1P18827 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC2.44□□□□□ -2.02
SDC1P18827 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC2.44□□□□□ -2.02
SDC1P18827 AC138761.3-201ENST00000579993 334 ntBASIC2.44□□□□□ -2.02
SDC1P18827 BNIP3P8-201ENST00000597863 560 ntBASIC2.44□□□□□ -2.02
SDC1P18827 AL356575.1-201ENST00000603008 283 ntBASIC2.44□□□□□ -2.02
SDC1P18827 AL670379.6-201ENST00000603753 252 ntBASIC2.44□□□□□ -2.02
SDC1P18827 AL670379.11-201ENST00000604059 253 ntBASIC2.44□□□□□ -2.02
SDC1P18827 AC008162.1-201ENST00000604718 254 ntBASIC2.44□□□□□ -2.02
SDC1P18827 AL670379.1-201ENST00000604752 252 ntBASIC2.44□□□□□ -2.02
SDC1P18827 AL670379.5-201ENST00000605253 252 ntBASIC2.44□□□□□ -2.02
SDC1P18827 AL670379.12-201ENST00000605291 253 ntBASIC2.44□□□□□ -2.02
SDC1P18827 AL670379.8-201ENST00000605353 252 ntBASIC2.44□□□□□ -2.02
SDC1P18827 AL670379.7-201ENST00000605823 252 ntBASIC2.44□□□□□ -2.02
SDC1P18827 AL451064.1-201ENST00000607718 471 ntBASIC2.44□□□□□ -2.02
SDC1P18827 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.44□□□□□ -2.02
SDC1P18827 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC2.44□□□□□ -2.02
SDC1P18827 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC2.44□□□□□ -2.02
SDC1P18827 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.44□□□□□ -2.02
SDC1P18827 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.44□□□□□ -2.02
SDC1P18827 AC138915.1-201ENST00000565427 1685 ntBASIC2.44□□□□□ -2.02
SDC1P18827 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC2.43□□□□□ -2.02
SDC1P18827 SNORD62.1-201ENST00000362541 86 ntBASIC2.43□□□□□ -2.02
SDC1P18827 RNU6-188P-201ENST00000364207 107 ntBASIC2.43□□□□□ -2.02
SDC1P18827 MRPL42P2-201ENST00000403169 426 ntBASIC2.43□□□□□ -2.02
SDC1P18827 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
SDC1P18827 RNA5SP492-201ENST00000411330 114 ntBASIC2.43□□□□□ -2.02
SDC1P18827 AL096701.2-201ENST00000416920 238 ntBASIC2.43□□□□□ -2.02
SDC1P18827 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC2.43□□□□□ -2.02
SDC1P18827 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC2.43□□□□□ -2.02
SDC1P18827 RPL7P37-201ENST00000425095 738 ntBASIC2.43□□□□□ -2.02
SDC1P18827 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC2.43□□□□□ -2.02
SDC1P18827 HMGB1P27-201ENST00000431429 603 ntBASIC2.43□□□□□ -2.02
SDC1P18827 GTF2IP20-201ENST00000431663 360 ntBASIC2.43□□□□□ -2.02
SDC1P18827 AC119618.1-201ENST00000434191 222 ntBASIC2.43□□□□□ -2.02
SDC1P18827 AC107083.1-201ENST00000439643 279 ntBASIC2.43□□□□□ -2.02
SDC1P18827 AL022238.1-201ENST00000442557 355 ntBASIC2.43□□□□□ -2.02
SDC1P18827 MTND6P13-201ENST00000443510 523 ntBASIC2.43□□□□□ -2.02
SDC1P18827 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC2.43□□□□□ -2.02
SDC1P18827 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC2.43□□□□□ -2.02
SDC1P18827 AC092798.1-201ENST00000458542 409 ntBASIC2.43□□□□□ -2.02
SDC1P18827 MRPS17P3-201ENST00000465453 385 ntBASIC2.43□□□□□ -2.02
SDC1P18827 RPL36AP51-201ENST00000487216 318 ntBASIC2.43□□□□□ -2.02
SDC1P18827 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC2.43□□□□□ -2.02
SDC1P18827 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.43□□□□□ -2.02
SDC1P18827 AC114786.4-201ENST00000508771 728 ntBASIC2.43□□□□□ -2.02
SDC1P18827 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.43□□□□□ -2.02
SDC1P18827 RNU2-10P-201ENST00000516375 211 ntBASIC2.43□□□□□ -2.02
SDC1P18827 RNU6-1092P-201ENST00000516955 87 ntBASIC2.43□□□□□ -2.02
SDC1P18827 RNA5SP165-201ENST00000517142 115 ntBASIC2.43□□□□□ -2.02
SDC1P18827 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC2.43□□□□□ -2.02
SDC1P18827 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC2.43□□□□□ -2.02
SDC1P18827 AC011979.2-201ENST00000527568 352 ntBASIC2.43□□□□□ -2.02
SDC1P18827 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC2.43□□□□□ -2.02
SDC1P18827 HSPE1P20-201ENST00000538133 289 ntBASIC2.43□□□□□ -2.02
SDC1P18827 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC2.43□□□□□ -2.02
SDC1P18827 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.43□□□□□ -2.02
SDC1P18827 AC060766.3-201ENST00000591442 263 ntBASIC2.43□□□□□ -2.02
SDC1P18827 Z94722.1-201ENST00000604328 474 ntBASIC2.43□□□□□ -2.02
SDC1P18827 AC004852.3-201ENST00000614131 326 ntBASIC2.43□□□□□ -2.02
SDC1P18827 AC068880.5-201ENST00000624331 290 ntBASIC2.43□□□□□ -2.02
SDC1P18827 U2.21-201ENST00000637295 81 ntBASIC2.43□□□□□ -2.02
SDC1P18827 AC008669.1-201ENST00000565823 2178 ntBASIC2.43□□□□□ -2.02
SDC1P18827 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
SDC1P18827 GNG5P1-201ENST00000255500 204 ntBASIC2.42□□□□□ -2.02
SDC1P18827 RNU6-859P-201ENST00000362728 107 ntBASIC2.42□□□□□ -2.02
SDC1P18827 U3.4-201ENST00000363352 213 ntBASIC2.42□□□□□ -2.02
SDC1P18827 RNU6-288P-201ENST00000363690 104 ntBASIC2.42□□□□□ -2.02
SDC1P18827 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.42□□□□□ -2.02
SDC1P18827 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.42□□□□□ -2.02
SDC1P18827 RNU1-109P-201ENST00000383960 147 ntBASIC2.42□□□□□ -2.02
SDC1P18827 SNORA48.2-201ENST00000390926 124 ntBASIC2.42□□□□□ -2.02
SDC1P18827 RNU6-817P-201ENST00000391083 104 ntBASIC2.42□□□□□ -2.02
SDC1P18827 RPS3AP3-201ENST00000411933 242 ntBASIC2.42□□□□□ -2.02
SDC1P18827 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.42□□□□□ -2.02
SDC1P18827 HMGN1P14-201ENST00000412459 517 ntBASIC2.42□□□□□ -2.02
SDC1P18827 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.42□□□□□ -2.02
SDC1P18827 AC009518.2-201ENST00000418056 731 ntBASIC2.42□□□□□ -2.02
SDC1P18827 SKA2P1-201ENST00000425592 390 ntBASIC2.42□□□□□ -2.02
SDC1P18827 GPM6BP2-201ENST00000432046 144 ntBASIC2.42□□□□□ -2.02
SDC1P18827 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC2.42□□□□□ -2.02
SDC1P18827 Z96811.1-201ENST00000445880 108 ntBASIC2.42□□□□□ -2.02
SDC1P18827 GPM6BP1-201ENST00000446387 144 ntBASIC2.42□□□□□ -2.02
SDC1P18827 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.42□□□□□ -2.02
SDC1P18827 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.42□□□□□ -2.02
SDC1P18827 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC2.42□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 120 ms