Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 AL353729.1-201ENST00000425044 720 ntBASIC2.55□□□□□ -2
CLDN3O15551 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC2.55□□□□□ -2
CLDN3O15551 MTND1P32-201ENST00000433043 938 ntBASIC2.55□□□□□ -2
CLDN3O15551 UBE2FP3-201ENST00000436366 524 ntBASIC2.55□□□□□ -2
CLDN3O15551 ZNF736P11Y-201ENST00000442535 1213 ntBASIC2.55□□□□□ -2
CLDN3O15551 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC2.55□□□□□ -2
CLDN3O15551 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC2.55□□□□□ -2
CLDN3O15551 ANKRD26P4-201ENST00000455755 950 ntBASIC2.55□□□□□ -2
CLDN3O15551 RPF2P2-201ENST00000504693 896 ntBASIC2.55□□□□□ -2
CLDN3O15551 RPL37P25-201ENST00000507308 276 ntBASIC2.55□□□□□ -2
CLDN3O15551 NDUFB4P2-201ENST00000509515 391 ntBASIC2.55□□□□□ -2
CLDN3O15551 AC008413.1-201ENST00000511864 177 ntBASIC2.55□□□□□ -2
CLDN3O15551 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC2.55□□□□□ -2
CLDN3O15551 RNU1-104P-201ENST00000517280 175 ntBASIC2.55□□□□□ -2
CLDN3O15551 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
CLDN3O15551 SNORD53-201ENST00000579969 78 ntBASIC2.55□□□□□ -2
CLDN3O15551 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.55□□□□□ -2
CLDN3O15551 MIR4658-201ENST00000584344 65 ntBASIC2.55□□□□□ -2
CLDN3O15551 BNIP3P40-201ENST00000596017 556 ntBASIC2.55□□□□□ -2
CLDN3O15551 AC107294.1-201ENST00000609524 467 ntBASIC2.55□□□□□ -2
CLDN3O15551 AL355472.4-201ENST00000610233 626 ntBASIC2.55□□□□□ -2
CLDN3O15551 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC2.55□□□□□ -2
CLDN3O15551 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.55□□□□□ -2
CLDN3O15551 AC009159.1-201ENST00000618386 642 ntBASIC2.55□□□□□ -2
CLDN3O15551 AL590808.1-201ENST00000618696 141 ntBASIC2.55□□□□□ -2
CLDN3O15551 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.54□□□□□ -2
CLDN3O15551 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.54□□□□□ -2
CLDN3O15551 AC093536.2-201ENST00000565257 1406 ntBASIC2.54□□□□□ -2
CLDN3O15551 MTND4P27-201ENST00000450813 1354 ntBASIC2.54□□□□□ -2
CLDN3O15551 ANAPC10P1-201ENST00000395991 556 ntBASIC2.54□□□□□ -2
CLDN3O15551 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC2.54□□□□□ -2
CLDN3O15551 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC2.54□□□□□ -2
CLDN3O15551 AL022400.1-201ENST00000423946 935 ntBASIC2.54□□□□□ -2
CLDN3O15551 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2.54□□□□□ -2
CLDN3O15551 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC2.54□□□□□ -2
CLDN3O15551 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC2.54□□□□□ -2
CLDN3O15551 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC2.54□□□□□ -2
CLDN3O15551 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC2.54□□□□□ -2
CLDN3O15551 LINC00888-204ENST00000487386 421 ntBASIC2.54□□□□□ -2
CLDN3O15551 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.54□□□□□ -2
CLDN3O15551 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC2.54□□□□□ -2
CLDN3O15551 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.54□□□□□ -2
CLDN3O15551 RNU6-311P-201ENST00000516224 102 ntBASIC2.54□□□□□ -2
CLDN3O15551 RNA5SP281-201ENST00000516504 135 ntBASIC2.54□□□□□ -2
CLDN3O15551 RNU5A-4P-201ENST00000516588 111 ntBASIC2.54□□□□□ -2
CLDN3O15551 SCARNA1-201ENST00000517138 166 ntBASIC2.54□□□□□ -2
CLDN3O15551 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.54□□□□□ -2
CLDN3O15551 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC2.54□□□□□ -2
CLDN3O15551 MRPS36P5-201ENST00000551909 298 ntBASIC2.54□□□□□ -2
CLDN3O15551 AC105137.2-201ENST00000569073 466 ntBASIC2.54□□□□□ -2
CLDN3O15551 MIR3167-201ENST00000579623 85 ntBASIC2.54□□□□□ -2
CLDN3O15551 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC2.54□□□□□ -2
CLDN3O15551 MIR3199-1-201ENST00000582434 88 ntBASIC2.54□□□□□ -2
CLDN3O15551 MIR5007-201ENST00000583098 95 ntBASIC2.54□□□□□ -2
CLDN3O15551 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC2.54□□□□□ -2
CLDN3O15551 AL355598.1-201ENST00000604169 202 ntBASIC2.54□□□□□ -2
CLDN3O15551 AC105148.1-201ENST00000604961 409 ntBASIC2.54□□□□□ -2
CLDN3O15551 AL450336.1-201ENST00000605180 586 ntBASIC2.54□□□□□ -2
CLDN3O15551 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC2.54□□□□□ -2
CLDN3O15551 AC092106.3-201ENST00000611308 722 ntBASIC2.54□□□□□ -2
CLDN3O15551 AL078595.3-201ENST00000623815 1166 ntBASIC2.54□□□□□ -2
CLDN3O15551 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC2.54□□□□□ -2
CLDN3O15551 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.54□□□□□ -2
CLDN3O15551 AC010329.5-201ENST00000623497 2174 ntBASIC2.54□□□□□ -2
CLDN3O15551 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.54□□□□□ -2
CLDN3O15551 Z82209.1-201ENST00000422141 2135 ntBASIC2.54□□□□□ -2
CLDN3O15551 AC006020.1-201ENST00000420179 1854 ntBASIC2.54□□□□□ -2
CLDN3O15551 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC2.53□□□□□ -2
CLDN3O15551 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.53□□□□□ -2
CLDN3O15551 RNU6-701P-201ENST00000384059 107 ntBASIC2.53□□□□□ -2
CLDN3O15551 MIR218-1-201ENST00000384999 110 ntBASIC2.53□□□□□ -2
CLDN3O15551 MIR513B-201ENST00000385136 84 ntBASIC2.53□□□□□ -2
CLDN3O15551 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC2.53□□□□□ -2
CLDN3O15551 AC107081.1-201ENST00000414975 361 ntBASIC2.53□□□□□ -2
CLDN3O15551 AL008987.1-201ENST00000415528 237 ntBASIC2.53□□□□□ -2
CLDN3O15551 SEPT2P1-201ENST00000419651 180 ntBASIC2.53□□□□□ -2
CLDN3O15551 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC2.53□□□□□ -2
CLDN3O15551 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.53□□□□□ -2
CLDN3O15551 RPS15AP28-201ENST00000435088 386 ntBASIC2.53□□□□□ -2
CLDN3O15551 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.53□□□□□ -2
CLDN3O15551 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC2.53□□□□□ -2
CLDN3O15551 TRBV1-201ENST00000476502 284 ntBASIC2.53□□□□□ -2
CLDN3O15551 GZMAP1-201ENST00000503054 631 ntBASIC2.53□□□□□ -2
CLDN3O15551 AC023141.11-201ENST00000508864 202 ntBASIC2.53□□□□□ -2
CLDN3O15551 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.53□□□□□ -2
CLDN3O15551 AC112673.1-201ENST00000513168 575 ntBASIC2.53□□□□□ -2
CLDN3O15551 AC023824.2-201ENST00000566185 400 ntBASIC2.53□□□□□ -2
CLDN3O15551 AC005261.5-201ENST00000596280 355 ntBASIC2.53□□□□□ -2
CLDN3O15551 AL589743.7-201ENST00000612637 233 ntBASIC2.53□□□□□ -2
CLDN3O15551 AC016597.2-201ENST00000613256 341 ntBASIC2.53□□□□□ -2
CLDN3O15551 AC011939.3-201ENST00000613686 466 ntBASIC2.53□□□□□ -2
CLDN3O15551 HMGB1P24-202ENST00000615653 685 ntBASIC2.53□□□□□ -2
CLDN3O15551 AC022960.3-201ENST00000619794 441 ntBASIC2.53□□□□□ -2
CLDN3O15551 OR4G3P-201ENST00000633500 913 ntBASIC2.53□□□□□ -2
CLDN3O15551 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.53□□□□□ -2
CLDN3O15551 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.53□□□□□ -2.01
CLDN3O15551 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC2.53□□□□□ -2.01
CLDN3O15551 Y_RNA.18-201ENST00000362461 102 ntBASIC2.52□□□□□ -2.01
CLDN3O15551 SNORA67.1-201ENST00000364749 141 ntBASIC2.52□□□□□ -2.01
CLDN3O15551 RNA5SP126-201ENST00000365092 109 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms