Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.31□□□□□ -2.2
HMGB3O15347 AC011939.3-201ENST00000613686 466 ntBASIC1.31□□□□□ -2.2
HMGB3O15347 AC084824.4-201ENST00000620106 731 ntBASIC1.31□□□□□ -2.2
HMGB3O15347 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC1.31□□□□□ -2.2
HMGB3O15347 AC091953.2-201ENST00000623979 160 ntBASIC1.31□□□□□ -2.2
HMGB3O15347 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
HMGB3O15347 Z75746.1-201ENST00000440243 2080 ntBASIC1.31□□□□□ -2.2
HMGB3O15347 RNU6-883P-201ENST00000384597 107 ntBASIC1.3□□□□□ -2.2
HMGB3O15347 MIR9-3-201ENST00000385084 90 ntBASIC1.3□□□□□ -2.2
HMGB3O15347 MIR561-201ENST00000385216 97 ntBASIC1.3□□□□□ -2.2
HMGB3O15347 RNU4-27P-201ENST00000410889 139 ntBASIC1.3□□□□□ -2.2
HMGB3O15347 USP9YP6-201ENST00000413550 854 ntBASIC1.3□□□□□ -2.2
HMGB3O15347 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC1.3□□□□□ -2.2
HMGB3O15347 RPL7P34-201ENST00000433316 712 ntBASIC1.3□□□□□ -2.2
HMGB3O15347 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC1.3□□□□□ -2.2
HMGB3O15347 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC1.3□□□□□ -2.2
HMGB3O15347 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC1.3□□□□□ -2.2
HMGB3O15347 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
HMGB3O15347 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC1.3□□□□□ -2.2
HMGB3O15347 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC1.3□□□□□ -2.2
HMGB3O15347 AL360221.1-201ENST00000445989 335 ntBASIC1.3□□□□□ -2.2
HMGB3O15347 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC1.3□□□□□ -2.2
HMGB3O15347 TMEM251P1-201ENST00000503717 318 ntBASIC1.3□□□□□ -2.2
HMGB3O15347 AC093752.1-206ENST00000511823 336 ntBASIC1.3□□□□□ -2.2
HMGB3O15347 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC1.3□□□□□ -2.2
HMGB3O15347 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC1.3□□□□□ -2.2
HMGB3O15347 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC1.3□□□□□ -2.2
HMGB3O15347 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC1.3□□□□□ -2.2
HMGB3O15347 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC1.3□□□□□ -2.2
HMGB3O15347 MIR1273D-201ENST00000577266 86 ntBASIC1.3□□□□□ -2.2
HMGB3O15347 RPAP2P1-201ENST00000603626 1168 ntBASIC1.3□□□□□ -2.2
HMGB3O15347 KATNBL1P5-201ENST00000605015 517 ntBASIC1.3□□□□□ -2.2
HMGB3O15347 AL160281.1-201ENST00000605307 311 ntBASIC1.3□□□□□ -2.2
HMGB3O15347 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.3□□□□□ -2.2
HMGB3O15347 AC010133.1-201ENST00000615809 842 ntBASIC1.3□□□□□ -2.2
HMGB3O15347 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC1.3□□□□□ -2.2
HMGB3O15347 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC1.3□□□□□ -2.2
HMGB3O15347 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC1.3□□□□□ -2.2
HMGB3O15347 CDC27P3-201ENST00000635418 1910 ntBASIC1.29□□□□□ -2.2
HMGB3O15347 AL356292.1-201ENST00000283110 373 ntBASIC1.29□□□□□ -2.2
HMGB3O15347 SNRPEP3-201ENST00000338402 276 ntBASIC1.29□□□□□ -2.2
HMGB3O15347 RNU6-637P-201ENST00000384050 107 ntBASIC1.29□□□□□ -2.2
HMGB3O15347 MIR517C-201ENST00000385103 95 ntBASIC1.29□□□□□ -2.2
HMGB3O15347 RNU6-1300P-201ENST00000391046 108 ntBASIC1.29□□□□□ -2.2
HMGB3O15347 MIR1294-201ENST00000408503 142 ntBASIC1.29□□□□□ -2.2
HMGB3O15347 POLHP1-201ENST00000411806 470 ntBASIC1.29□□□□□ -2.2
HMGB3O15347 Z98742.3-201ENST00000418637 326 ntBASIC1.29□□□□□ -2.2
HMGB3O15347 MTCO2P5-201ENST00000422621 426 ntBASIC1.29□□□□□ -2.2
HMGB3O15347 EIF4EP2-201ENST00000422816 654 ntBASIC1.29□□□□□ -2.2
HMGB3O15347 PTGES3P4-201ENST00000426243 356 ntBASIC1.29□□□□□ -2.2
HMGB3O15347 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC1.29□□□□□ -2.2
HMGB3O15347 MTND1P28-201ENST00000435623 950 ntBASIC1.29□□□□□ -2.2
HMGB3O15347 AL121601.2-201ENST00000438019 707 ntBASIC1.29□□□□□ -2.2
HMGB3O15347 AL353705.4-201ENST00000449661 238 ntBASIC1.29□□□□□ -2.2
HMGB3O15347 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC1.29□□□□□ -2.2
HMGB3O15347 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC1.29□□□□□ -2.2
HMGB3O15347 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC1.29□□□□□ -2.2
HMGB3O15347 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.29□□□□□ -2.2
HMGB3O15347 RN7SKP179-201ENST00000516126 217 ntBASIC1.29□□□□□ -2.2
HMGB3O15347 SNORA48.11-201ENST00000517015 89 ntBASIC1.29□□□□□ -2.2
HMGB3O15347 SNORA76.2-201ENST00000517095 137 ntBASIC1.29□□□□□ -2.2
HMGB3O15347 NAP1L1P1-201ENST00000524793 1063 ntBASIC1.29□□□□□ -2.2
HMGB3O15347 RANP3-201ENST00000530970 276 ntBASIC1.29□□□□□ -2.2
HMGB3O15347 NDUFA5P6-201ENST00000542110 379 ntBASIC1.29□□□□□ -2.2
HMGB3O15347 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC1.29□□□□□ -2.2
HMGB3O15347 AC110588.1-201ENST00000559699 137 ntBASIC1.29□□□□□ -2.2
HMGB3O15347 ZNF971P-201ENST00000562068 1249 ntBASIC1.29□□□□□ -2.2
HMGB3O15347 AC090079.2-201ENST00000575289 768 ntBASIC1.29□□□□□ -2.2
HMGB3O15347 MIR3198-2-201ENST00000577868 80 ntBASIC1.29□□□□□ -2.2
HMGB3O15347 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.29□□□□□ -2.2
HMGB3O15347 UBE2L4-201ENST00000587688 464 ntBASIC1.29□□□□□ -2.2
HMGB3O15347 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC1.29□□□□□ -2.2
HMGB3O15347 AL109620.1-201ENST00000618738 1197 ntBASIC1.29□□□□□ -2.2
HMGB3O15347 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.29□□□□□ -2.2
HMGB3O15347 AC092192.1-201ENST00000633154 1018 ntBASIC1.29□□□□□ -2.2
HMGB3O15347 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC1.29□□□□□ -2.2
HMGB3O15347 ZNF876P-202ENST00000398732 1485 ntBASIC1.29□□□□□ -2.2
HMGB3O15347 MTND5P29-201ENST00000458676 1807 ntBASIC1.29□□□□□ -2.2
HMGB3O15347 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
HMGB3O15347 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
HMGB3O15347 MCTS2P-201ENST00000394552 546 ntBASIC1.28□□□□□ -2.2
HMGB3O15347 DHFRP6-201ENST00000401776 268 ntBASIC1.28□□□□□ -2.2
HMGB3O15347 RN7SKP51-201ENST00000410781 304 ntBASIC1.28□□□□□ -2.2
HMGB3O15347 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC1.28□□□□□ -2.2
HMGB3O15347 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC1.28□□□□□ -2.2
HMGB3O15347 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC1.28□□□□□ -2.2
HMGB3O15347 AL449283.1-202ENST00000418249 604 ntBASIC1.28□□□□□ -2.2
HMGB3O15347 AL139421.1-201ENST00000423010 169 ntBASIC1.28□□□□□ -2.2
HMGB3O15347 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC1.28□□□□□ -2.2
HMGB3O15347 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC1.28□□□□□ -2.2
HMGB3O15347 MTCO1P53-201ENST00000441633 699 ntBASIC1.28□□□□□ -2.2
HMGB3O15347 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC1.28□□□□□ -2.2
HMGB3O15347 CECR9-201ENST00000453421 199 ntBASIC1.28□□□□□ -2.2
HMGB3O15347 CKS1BP2-201ENST00000497342 240 ntBASIC1.28□□□□□ -2.2
HMGB3O15347 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC1.28□□□□□ -2.2
HMGB3O15347 ANXA2P1-201ENST00000505539 926 ntBASIC1.28□□□□□ -2.2
HMGB3O15347 RNU6-1261P-201ENST00000517194 104 ntBASIC1.28□□□□□ -2.2
HMGB3O15347 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC1.28□□□□□ -2.2
HMGB3O15347 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC1.28□□□□□ -2.2
HMGB3O15347 AC084851.1-201ENST00000529105 249 ntBASIC1.28□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms