Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
NPHP1O15259 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.62□□□□□ -1.83
NPHP1O15259 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
NPHP1O15259 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
NPHP1O15259 SNORD56.2-201ENST00000363242 71 ntBASIC3.62□□□□□ -1.83
NPHP1O15259 RPL23AP32-201ENST00000395315 459 ntBASIC3.62□□□□□ -1.83
NPHP1O15259 RPS3AP3-201ENST00000411933 242 ntBASIC3.62□□□□□ -1.83
NPHP1O15259 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.62□□□□□ -1.83
NPHP1O15259 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC3.62□□□□□ -1.83
NPHP1O15259 RPL36AP53-201ENST00000432891 316 ntBASIC3.62□□□□□ -1.83
NPHP1O15259 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC3.62□□□□□ -1.83
NPHP1O15259 RPL37P4-201ENST00000448908 268 ntBASIC3.62□□□□□ -1.83
NPHP1O15259 RN7SL283P-201ENST00000489055 303 ntBASIC3.62□□□□□ -1.83
NPHP1O15259 RPL39P36-201ENST00000490784 156 ntBASIC3.62□□□□□ -1.83
NPHP1O15259 RPS27AP10-201ENST00000496103 208 ntBASIC3.62□□□□□ -1.83
NPHP1O15259 RNU7-51P-201ENST00000516560 62 ntBASIC3.62□□□□□ -1.83
NPHP1O15259 RNU2-46P-201ENST00000517038 113 ntBASIC3.62□□□□□ -1.83
NPHP1O15259 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC3.62□□□□□ -1.83
NPHP1O15259 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.62□□□□□ -1.83
NPHP1O15259 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.62□□□□□ -1.83
NPHP1O15259 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC3.62□□□□□ -1.83
NPHP1O15259 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.62□□□□□ -1.83
NPHP1O15259 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC3.62□□□□□ -1.83
NPHP1O15259 AC068276.1-201ENST00000605793 379 ntBASIC3.62□□□□□ -1.83
NPHP1O15259 AP002360.4-201ENST00000606980 481 ntBASIC3.62□□□□□ -1.83
NPHP1O15259 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.62□□□□□ -1.83
NPHP1O15259 DUSP12P1-201ENST00000612874 516 ntBASIC3.62□□□□□ -1.83
NPHP1O15259 AC073476.4-201ENST00000628409 72 ntBASIC3.62□□□□□ -1.83
NPHP1O15259 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
NPHP1O15259 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
NPHP1O15259 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
NPHP1O15259 FGF7P2-201ENST00000332473 296 ntBASIC3.61□□□□□ -1.83
NPHP1O15259 RNU6-288P-201ENST00000363690 104 ntBASIC3.61□□□□□ -1.83
NPHP1O15259 RNU6-188P-201ENST00000364207 107 ntBASIC3.61□□□□□ -1.83
NPHP1O15259 RNU1-73P-201ENST00000383971 164 ntBASIC3.61□□□□□ -1.83
NPHP1O15259 RPL21P3-201ENST00000395517 478 ntBASIC3.61□□□□□ -1.83
NPHP1O15259 AC023141.4-201ENST00000412031 328 ntBASIC3.61□□□□□ -1.83
NPHP1O15259 RPS12P24-201ENST00000412619 387 ntBASIC3.61□□□□□ -1.83
NPHP1O15259 NDUFS5P4-201ENST00000412983 318 ntBASIC3.61□□□□□ -1.83
NPHP1O15259 BPY2DP-201ENST00000422208 265 ntBASIC3.61□□□□□ -1.83
NPHP1O15259 OR2AS1P-201ENST00000427827 319 ntBASIC3.61□□□□□ -1.83
NPHP1O15259 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.61□□□□□ -1.83
NPHP1O15259 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC3.61□□□□□ -1.83
NPHP1O15259 RNU6-953P-201ENST00000459154 107 ntBASIC3.61□□□□□ -1.83
NPHP1O15259 AC146507.2-201ENST00000460608 476 ntBASIC3.61□□□□□ -1.83
NPHP1O15259 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.61□□□□□ -1.83
NPHP1O15259 SNORA31.26-201ENST00000517250 137 ntBASIC3.61□□□□□ -1.83
NPHP1O15259 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.61□□□□□ -1.83
NPHP1O15259 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.61□□□□□ -1.83
NPHP1O15259 AC010620.2-201ENST00000600135 313 ntBASIC3.61□□□□□ -1.83
NPHP1O15259 Z99497.2-201ENST00000603634 310 ntBASIC3.61□□□□□ -1.83
NPHP1O15259 ZNF519P1-201ENST00000449011 1626 ntBASIC3.61□□□□□ -1.83
NPHP1O15259 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
NPHP1O15259 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.61□□□□□ -1.83
NPHP1O15259 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.6□□□□□ -1.83
NPHP1O15259 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.6□□□□□ -1.83
NPHP1O15259 CR848007.1-201ENST00000442354 1699 ntBASIC3.6□□□□□ -1.83
NPHP1O15259 U8.3-201ENST00000363321 132 ntBASIC3.6□□□□□ -1.83
NPHP1O15259 RNU4-91P-201ENST00000364778 135 ntBASIC3.6□□□□□ -1.83
NPHP1O15259 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
NPHP1O15259 DYNLT3P1-201ENST00000378574 347 ntBASIC3.6□□□□□ -1.83
NPHP1O15259 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC3.6□□□□□ -1.83
NPHP1O15259 RNU6-946P-201ENST00000383878 107 ntBASIC3.6□□□□□ -1.83
NPHP1O15259 SNORD21-201ENST00000383953 95 ntBASIC3.6□□□□□ -1.83
NPHP1O15259 RNY3P10-201ENST00000384764 102 ntBASIC3.6□□□□□ -1.83
NPHP1O15259 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.6□□□□□ -1.83
NPHP1O15259 MIR1261-201ENST00000408659 82 ntBASIC3.6□□□□□ -1.83
NPHP1O15259 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC3.6□□□□□ -1.83
NPHP1O15259 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC3.6□□□□□ -1.83
NPHP1O15259 AL592045.1-201ENST00000429867 352 ntBASIC3.6□□□□□ -1.83
NPHP1O15259 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC3.6□□□□□ -1.83
NPHP1O15259 RPS15AP5-201ENST00000436276 388 ntBASIC3.6□□□□□ -1.83
NPHP1O15259 MTND4P25-201ENST00000441039 533 ntBASIC3.6□□□□□ -1.83
NPHP1O15259 COX6CP2-201ENST00000444980 225 ntBASIC3.6□□□□□ -1.83
NPHP1O15259 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC3.6□□□□□ -1.83
NPHP1O15259 RNA5SP269-201ENST00000459032 137 ntBASIC3.6□□□□□ -1.83
NPHP1O15259 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC3.6□□□□□ -1.83
NPHP1O15259 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC3.6□□□□□ -1.83
NPHP1O15259 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC3.6□□□□□ -1.83
NPHP1O15259 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.6□□□□□ -1.83
NPHP1O15259 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.6□□□□□ -1.83
NPHP1O15259 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC3.6□□□□□ -1.83
NPHP1O15259 AC025281.1-201ENST00000567026 265 ntBASIC3.6□□□□□ -1.83
NPHP1O15259 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.6□□□□□ -1.83
NPHP1O15259 AC010546.1-201ENST00000569391 485 ntBASIC3.6□□□□□ -1.83
NPHP1O15259 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.6□□□□□ -1.83
NPHP1O15259 UCA1.1-201ENST00000620952 75 ntBASIC3.6□□□□□ -1.83
NPHP1O15259 AL359757.2-201ENST00000624309 274 ntBASIC3.6□□□□□ -1.83
NPHP1O15259 AL035425.3-201ENST00000564206 4996 ntBASIC3.6□□□□□ -1.83
NPHP1O15259 AC096644.4-201ENST00000563417 2912 ntBASIC3.6□□□□□ -1.83
NPHP1O15259 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC3.6□□□□□ -1.83
NPHP1O15259 ELF2P3-201ENST00000445099 1506 ntBASIC3.6□□□□□ -1.83
NPHP1O15259 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
NPHP1O15259 AC093831.2-201ENST00000624393 3427 ntBASIC3.59□□□□□ -1.83
NPHP1O15259 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.59□□□□□ -1.83
NPHP1O15259 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.59□□□□□ -1.83
NPHP1O15259 RNU6-859P-201ENST00000362728 107 ntBASIC3.59□□□□□ -1.83
NPHP1O15259 U3.4-201ENST00000363352 213 ntBASIC3.59□□□□□ -1.83
NPHP1O15259 RNU6-39P-201ENST00000384344 107 ntBASIC3.59□□□□□ -1.83
NPHP1O15259 RNU2-8P-201ENST00000410727 190 ntBASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 92.1 ms