Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 AC093535.2-201ENST00000624769 2326 ntBASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 GNAS-202ENST00000306090 477 ntTSL 5 BASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 RNU6-1048P-201ENST00000364054 107 ntBASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 RNU6-573P-201ENST00000383938 106 ntBASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 U3.40-201ENST00000408706 208 ntBASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 RNA5SP475-201ENST00000410568 110 ntBASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 ELOCP21-201ENST00000412558 336 ntBASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 RPL26P27-201ENST00000414397 437 ntBASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 YPEL5P1-201ENST00000419731 367 ntBASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 CYCSP49-201ENST00000420810 319 ntBASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 AC243964.1-201ENST00000441814 261 ntBASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 AL445665.1-202ENST00000452436 324 ntBASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 AC114781.3-201ENST00000512083 142 ntBASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 RNU6-572P-201ENST00000516724 80 ntBASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 IGLV3-30-201ENST00000524362 298 ntBASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 AC027369.5-201ENST00000533838 755 ntBASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 AC006199.1-201ENST00000548728 219 ntBASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 AC136624.4-201ENST00000573044 370 ntBASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 AC024581.2-201ENST00000619986 252 ntBASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 SNORA43.4-201ENST00000629559 138 ntBASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 AL596275.2-206ENST00000641957 626 ntBASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 AP005432.1-201ENST00000580891 3485 ntBASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS9D1Q9Y2B5 Z82209.1-201ENST00000422141 2135 ntBASIC5.59□□□□□ -1.52
VPS9D1Q9Y2B5 AL136164.4-201ENST00000625013 2135 ntBASIC5.59□□□□□ -1.52
VPS9D1Q9Y2B5 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.59□□□□□ -1.52
VPS9D1Q9Y2B5 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
VPS9D1Q9Y2B5 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC5.58□□□□□ -1.52
VPS9D1Q9Y2B5 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
VPS9D1Q9Y2B5 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
VPS9D1Q9Y2B5 SNORA72.4-201ENST00000384174 132 ntBASIC5.58□□□□□ -1.52
VPS9D1Q9Y2B5 AL512633.1-201ENST00000399931 655 ntBASIC5.58□□□□□ -1.52
VPS9D1Q9Y2B5 AL009179.1-201ENST00000406085 265 ntBASIC5.58□□□□□ -1.52
VPS9D1Q9Y2B5 RNU6-554P-201ENST00000410466 106 ntBASIC5.58□□□□□ -1.52
VPS9D1Q9Y2B5 RNU6-1245P-201ENST00000411130 106 ntBASIC5.58□□□□□ -1.52
VPS9D1Q9Y2B5 RN7SKP53-201ENST00000411337 315 ntBASIC5.58□□□□□ -1.52
VPS9D1Q9Y2B5 EDDM3CP-201ENST00000415977 425 ntBASIC5.58□□□□□ -1.52
VPS9D1Q9Y2B5 AC113412.1-201ENST00000425840 504 ntBASIC5.58□□□□□ -1.52
VPS9D1Q9Y2B5 AL135790.2-201ENST00000437701 267 ntBASIC5.58□□□□□ -1.52
VPS9D1Q9Y2B5 HLA-DPA3-207ENST00000454398 229 ntBASIC5.58□□□□□ -1.52
VPS9D1Q9Y2B5 AC083899.1-201ENST00000454465 3819 ntBASIC5.58□□□□□ -1.52
VPS9D1Q9Y2B5 RPL23AP70-201ENST00000483361 460 ntBASIC5.58□□□□□ -1.52
VPS9D1Q9Y2B5 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC5.58□□□□□ -1.52
VPS9D1Q9Y2B5 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC5.58□□□□□ -1.52
VPS9D1Q9Y2B5 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC5.58□□□□□ -1.52
VPS9D1Q9Y2B5 AP001318.4-201ENST00000616637 121 ntBASIC5.58□□□□□ -1.52
VPS9D1Q9Y2B5 uc_338.7-201ENST00000621834 124 ntBASIC5.58□□□□□ -1.52
VPS9D1Q9Y2B5 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.58□□□□□ -1.52
VPS9D1Q9Y2B5 AC099654.7-201ENST00000635788 2127 ntBASIC5.58□□□□□ -1.52
VPS9D1Q9Y2B5 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.58□□□□□ -1.52
VPS9D1Q9Y2B5 AC138915.1-201ENST00000565427 1685 ntBASIC5.58□□□□□ -1.52
VPS9D1Q9Y2B5 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
VPS9D1Q9Y2B5 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC5.58□□□□□ -1.52
VPS9D1Q9Y2B5 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
VPS9D1Q9Y2B5 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
VPS9D1Q9Y2B5 AC008079.2-201ENST00000623543 20396 ntBASIC5.58□□□□□ -1.52
VPS9D1Q9Y2B5 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 SNORA64.1-201ENST00000362600 132 ntBASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 RNA5SP326-201ENST00000363209 110 ntBASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 Y_RNA.245-201ENST00000364493 95 ntBASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 RNU6-597P-201ENST00000365620 102 ntBASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 RNU6-356P-201ENST00000384140 107 ntBASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 SNORA20B-201ENST00000384220 132 ntBASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 AL049745.1-201ENST00000433953 286 ntBASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 HSPE1P21-201ENST00000438283 308 ntBASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 127.2 ms