Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 U3.12-201ENST00000364498 214 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC2.6□□□□□ -1.99
LHX3Q9UBR4 AL031577.2-201ENST00000404133 280 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC2.6□□□□□ -1.99
LHX3Q9UBR4 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.6□□□□□ -1.99
LHX3Q9UBR4 AL365203.2-201ENST00000423444 196 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 TRIM60P10Y-201ENST00000425589 751 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC2.6□□□□□ -1.99
LHX3Q9UBR4 GTF2IP20-201ENST00000431663 360 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 GPM6BP2-201ENST00000432046 144 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.6□□□□□ -1.99
LHX3Q9UBR4 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2.6□□□□□ -1.99
LHX3Q9UBR4 GPM6BP1-201ENST00000446387 144 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 RPS15AP27-201ENST00000449183 343 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC2.6□□□□□ -1.99
LHX3Q9UBR4 SSXP1-201ENST00000453640 473 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 SNORA59A-201ENST00000459326 152 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 AP000797.1-201ENST00000478870 387 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 RPL36AP51-201ENST00000487216 318 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 RPS29P20-201ENST00000489592 171 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.6□□□□□ -1.99
LHX3Q9UBR4 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.6□□□□□ -1.99
LHX3Q9UBR4 AC009901.1-201ENST00000506703 541 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 RNA5SP471-201ENST00000516971 106 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 RNA5SP165-201ENST00000517142 115 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 AC026407.1-201ENST00000518369 204 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 AC022634.1-201ENST00000520765 532 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 AC087373.1-201ENST00000524920 491 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 AP006587.4-201ENST00000526053 529 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 AKIRIN1P1-201ENST00000547384 544 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC2.6□□□□□ -1.99
LHX3Q9UBR4 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC2.6□□□□□ -1.99
LHX3Q9UBR4 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.6□□□□□ -1.99
LHX3Q9UBR4 MIR3118-1-201ENST00000581787 76 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 NRBF2P5-201ENST00000603087 788 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 AL355877.2-201ENST00000603670 358 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 AP000860.1-201ENST00000605250 559 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 BX664608.1-201ENST00000610519 487 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 AC069234.5-201ENST00000611056 416 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 MIR6817-201ENST00000615588 66 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 AC006338.1-201ENST00000618453 749 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 AC091953.2-201ENST00000623979 160 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.6□□□□□ -1.99
LHX3Q9UBR4 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
LHX3Q9UBR4 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.59□□□□□ -1.99
LHX3Q9UBR4 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.59□□□□□ -1.99
LHX3Q9UBR4 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.59□□□□□ -1.99
LHX3Q9UBR4 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
LHX3Q9UBR4 RNA5SP68-201ENST00000363885 119 ntBASIC2.59□□□□□ -1.99
LHX3Q9UBR4 RNU6-512P-201ENST00000364438 103 ntBASIC2.59□□□□□ -1.99
LHX3Q9UBR4 RNU1-100P-201ENST00000365255 165 ntBASIC2.59□□□□□ -1.99
LHX3Q9UBR4 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC2.59□□□□□ -1.99
LHX3Q9UBR4 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.59□□□□□ -1.99
LHX3Q9UBR4 AL021407.1-201ENST00000404531 386 ntBASIC2.59□□□□□ -1.99
LHX3Q9UBR4 AL031121.1-201ENST00000406553 254 ntBASIC2.59□□□□□ -1.99
LHX3Q9UBR4 FCF1P10-201ENST00000407590 479 ntBASIC2.59□□□□□ -1.99
LHX3Q9UBR4 Y_RNA.608-201ENST00000410647 95 ntBASIC2.59□□□□□ -1.99
LHX3Q9UBR4 RNU2-68P-201ENST00000410878 191 ntBASIC2.59□□□□□ -1.99
LHX3Q9UBR4 RNA5SP344-201ENST00000411081 104 ntBASIC2.59□□□□□ -1.99
LHX3Q9UBR4 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC2.59□□□□□ -1.99
LHX3Q9UBR4 RPL7P37-201ENST00000425095 738 ntBASIC2.59□□□□□ -1.99
LHX3Q9UBR4 AL358075.3-201ENST00000426289 226 ntBASIC2.59□□□□□ -1.99
LHX3Q9UBR4 MTND1P30-201ENST00000441241 901 ntBASIC2.59□□□□□ -1.99
LHX3Q9UBR4 NEFMP1-201ENST00000443423 1006 ntBASIC2.59□□□□□ -1.99
LHX3Q9UBR4 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.59□□□□□ -1.99
LHX3Q9UBR4 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC2.59□□□□□ -1.99
LHX3Q9UBR4 AC126389.1-201ENST00000477436 290 ntBASIC2.59□□□□□ -1.99
LHX3Q9UBR4 RPL31P41-201ENST00000477967 372 ntBASIC2.59□□□□□ -1.99
LHX3Q9UBR4 RNA5SP320-201ENST00000516263 124 ntBASIC2.59□□□□□ -1.99
LHX3Q9UBR4 VBP1-203ENST00000535916 944 ntTSL 2 BASIC2.59□□□□□ -1.99
LHX3Q9UBR4 AL359212.1-201ENST00000556608 614 ntBASIC2.59□□□□□ -1.99
LHX3Q9UBR4 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC2.59□□□□□ -1.99
LHX3Q9UBR4 AC234778.2-201ENST00000566241 354 ntBASIC2.59□□□□□ -1.99
LHX3Q9UBR4 AC135628.1-201ENST00000568867 534 ntBASIC2.59□□□□□ -1.99
LHX3Q9UBR4 AL022161.1-201ENST00000604390 213 ntBASIC2.59□□□□□ -1.99
LHX3Q9UBR4 RNU6-87P-201ENST00000607561 108 ntBASIC2.59□□□□□ -1.99
LHX3Q9UBR4 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.59□□□□□ -1.99
LHX3Q9UBR4 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.59□□□□□ -1.99
LHX3Q9UBR4 AC138915.1-201ENST00000565427 1685 ntBASIC2.59□□□□□ -2
LHX3Q9UBR4 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC2.59□□□□□ -2
LHX3Q9UBR4 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.58□□□□□ -2
LHX3Q9UBR4 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.58□□□□□ -2
LHX3Q9UBR4 CR848007.1-201ENST00000442354 1699 ntBASIC2.58□□□□□ -2
LHX3Q9UBR4 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC2.58□□□□□ -2
LHX3Q9UBR4 RNU5E-5P-201ENST00000365379 116 ntBASIC2.58□□□□□ -2
LHX3Q9UBR4 RNU6-14P-201ENST00000384630 106 ntBASIC2.58□□□□□ -2
LHX3Q9UBR4 UBE2V1P2-201ENST00000397758 440 ntBASIC2.58□□□□□ -2
LHX3Q9UBR4 RPA3-203ENST00000401447 414 ntTSL 3 BASIC2.58□□□□□ -2
LHX3Q9UBR4 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.58□□□□□ -2
LHX3Q9UBR4 RNU2-36P-201ENST00000410361 191 ntBASIC2.58□□□□□ -2
LHX3Q9UBR4 RPS15AP12-201ENST00000419498 388 ntBASIC2.58□□□□□ -2
LHX3Q9UBR4 ISCA1P1-201ENST00000426679 387 ntBASIC2.58□□□□□ -2
LHX3Q9UBR4 AC104332.2-201ENST00000429959 156 ntBASIC2.58□□□□□ -2
LHX3Q9UBR4 MED14P1-201ENST00000430517 648 ntBASIC2.58□□□□□ -2
LHX3Q9UBR4 AL445567.1-201ENST00000439121 144 ntBASIC2.58□□□□□ -2
LHX3Q9UBR4 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC2.58□□□□□ -2
LHX3Q9UBR4 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC2.58□□□□□ -2
LHX3Q9UBR4 MTND1P12-201ENST00000455231 147 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms