Protein–RNA interactions for Protein: Q9P1Z3

HCN3, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HCN3Q9P1Z3 UBE2V1P2-201ENST00000397758 440 ntBASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 AL139039.1-201ENST00000401900 692 ntBASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 AL590002.1-201ENST00000406554 418 ntBASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 RNU6-387P-201ENST00000411331 105 ntBASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 BX323014.1-201ENST00000412876 237 ntBASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 MRPL50P2-201ENST00000416821 482 ntBASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 AL159987.2-201ENST00000432754 307 ntBASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 MRPS31P2-201ENST00000451581 518 ntBASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 RBMY2UP-201ENST00000453474 324 ntBASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 RPL21P10-201ENST00000463521 490 ntBASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 AP003034.1-201ENST00000534621 422 ntBASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 AC026333.2-201ENST00000542164 106 ntBASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 AC027807.1-201ENST00000559921 996 ntBASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 AC008752.3-201ENST00000588113 712 ntBASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 AC126118.1-201ENST00000607744 628 ntBASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 AC092954.2-201ENST00000609103 430 ntBASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 AC017083.3-201ENST00000609955 700 ntBASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 AL354950.2-201ENST00000617939 290 ntBASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 AC099506.2-201ENST00000623074 221 ntBASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 AC005609.4-201ENST00000625071 447 ntBASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 CKAP2P1-201ENST00000555477 2049 ntBASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.27□□□□□ -1.89
HCN3Q9P1Z3 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 Y_RNA.6-201ENST00000362350 114 ntBASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 RNA5SP197-201ENST00000363357 119 ntBASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 RNU6-884P-201ENST00000363889 107 ntBASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 MIR483-201ENST00000385070 76 ntBASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 Y_RNA.619-201ENST00000410951 90 ntBASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 UBE2V1P10-201ENST00000414685 269 ntBASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 AL606489.2-201ENST00000433886 234 ntBASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 RPS4XP22-201ENST00000480755 780 ntBASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 AC233702.1-201ENST00000482905 502 ntBASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 AC139453.3-201ENST00000493276 369 ntBASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 AC109927.2-201ENST00000506416 303 ntBASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 AP006245.1-201ENST00000522549 120 ntBASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 AL512360.1-201ENST00000555346 234 ntBASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 AC005951.1-201ENST00000576706 485 ntBASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 MTND4LP5-201ENST00000605152 292 ntBASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 AL355365.1-201ENST00000616480 294 ntBASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 SNORD39.4-201ENST00000620099 78 ntBASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 AC091953.5-201ENST00000622919 233 ntBASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 AC068137.3-201ENST00000639191 341 ntBASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 AC073869.6-201ENST00000640656 341 ntBASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.26□□□□□ -1.89
HCN3Q9P1Z3 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 RNA5SP72-201ENST00000364442 117 ntBASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 RNU6-198P-201ENST00000384258 104 ntBASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 Y_RNA.505-201ENST00000384489 102 ntBASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 Y_RNA.534-201ENST00000384599 112 ntBASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 RNU6-780P-201ENST00000391030 104 ntBASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 RNU6-1158P-201ENST00000391167 107 ntBASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 AL354719.1-201ENST00000406535 843 ntBASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 AL031779.1-201ENST00000415663 330 ntBASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 AL160275.3-201ENST00000423876 471 ntBASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 CALM2P2-201ENST00000428512 440 ntBASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 TIMM9P3-201ENST00000428659 274 ntBASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 C8orf59P1-201ENST00000429930 303 ntBASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 MTND3P21-201ENST00000433774 331 ntBASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 136 ms