Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC2.62□□□□□ -1.99
LIME1Q9H400 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.62□□□□□ -1.99
LIME1Q9H400 AC005951.1-201ENST00000576706 485 ntBASIC2.62□□□□□ -1.99
LIME1Q9H400 MIR3611-201ENST00000584484 83 ntBASIC2.62□□□□□ -1.99
LIME1Q9H400 AC002545.1-201ENST00000592511 181 ntBASIC2.62□□□□□ -1.99
LIME1Q9H400 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.62□□□□□ -1.99
LIME1Q9H400 AC079089.3-201ENST00000603094 673 ntBASIC2.62□□□□□ -1.99
LIME1Q9H400 DPPA3P3-201ENST00000603842 430 ntBASIC2.62□□□□□ -1.99
LIME1Q9H400 AC104763.2-201ENST00000604179 382 ntBASIC2.62□□□□□ -1.99
LIME1Q9H400 ATP1B3P1-201ENST00000605365 821 ntBASIC2.62□□□□□ -1.99
LIME1Q9H400 AC007619.2-201ENST00000605743 379 ntBASIC2.62□□□□□ -1.99
LIME1Q9H400 AC006566.1-201ENST00000608943 513 ntBASIC2.62□□□□□ -1.99
LIME1Q9H400 AL589743.7-201ENST00000612637 233 ntBASIC2.62□□□□□ -1.99
LIME1Q9H400 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC2.62□□□□□ -1.99
LIME1Q9H400 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
LIME1Q9H400 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC2.62□□□□□ -1.99
LIME1Q9H400 MIR622-201ENST00000638396 96 ntBASIC2.62□□□□□ -1.99
LIME1Q9H400 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC2.62□□□□□ -1.99
LIME1Q9H400 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.62□□□□□ -1.99
LIME1Q9H400 AC009487.2-201ENST00000420969 6821 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
LIME1Q9H400 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC2.61□□□□□ -1.99
LIME1Q9H400 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC2.61□□□□□ -1.99
LIME1Q9H400 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
LIME1Q9H400 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
LIME1Q9H400 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
LIME1Q9H400 AC062016.1-201ENST00000355719 319 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 Y_RNA.22-201ENST00000362492 102 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 SNORD56.2-201ENST00000363242 71 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 Y_RNA.359-201ENST00000365498 102 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 SMIM11P1-201ENST00000369586 178 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 RNU6-217P-201ENST00000384164 104 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 RNU6-39P-201ENST00000384344 107 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 MIR558-201ENST00000384920 94 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 RNU6-817P-201ENST00000391083 104 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 RNA5SP184-201ENST00000411071 108 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 RNU6-195P-201ENST00000411352 109 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 MORF4L1P6-201ENST00000418771 268 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 AC016907.1-201ENST00000419483 435 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 ELOCP4-201ENST00000420090 333 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 AL512844.2-201ENST00000433990 593 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 AC092573.2-201ENST00000434546 243 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 RPL36AP6-201ENST00000435770 321 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 PIGFP3-201ENST00000441918 722 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC2.61□□□□□ -1.99
LIME1Q9H400 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC2.61□□□□□ -1.99
LIME1Q9H400 AL109933.2-201ENST00000452651 260 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 AC126389.1-201ENST00000477436 290 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 AC006445.2-201ENST00000510061 472 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 SNORA31.1-201ENST00000515993 133 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 SNORA31.5-201ENST00000516190 133 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 RNU7-51P-201ENST00000516560 62 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC2.61□□□□□ -1.99
LIME1Q9H400 AC090572.1-201ENST00000519251 160 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2.61□□□□□ -1.99
LIME1Q9H400 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.61□□□□□ -1.99
LIME1Q9H400 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC2.61□□□□□ -1.99
LIME1Q9H400 AC012213.3-201ENST00000577199 777 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 MIR3913-1-201ENST00000577744 102 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 GLUD1P4-201ENST00000590914 418 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 AC245014.2-201ENST00000603689 287 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 AL035413.2-201ENST00000604801 525 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 AC246785.4-201ENST00000605374 287 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 AC005332.10-201ENST00000612725 619 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 AC034102.8-201ENST00000615146 484 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 FRG1KP-201ENST00000623592 341 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 AC110994.2-201ENST00000635481 492 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 AC005183.1-201ENST00000603687 1979 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 AC010680.1-201ENST00000590024 3590 ntBASIC2.61□□□□□ -1.99
LIME1Q9H400 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
LIME1Q9H400 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
LIME1Q9H400 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC2.6□□□□□ -1.99
LIME1Q9H400 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.6□□□□□ -1.99
LIME1Q9H400 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.6□□□□□ -1.99
LIME1Q9H400 Y_RNA.194-201ENST00000363985 102 ntBASIC2.6□□□□□ -1.99
LIME1Q9H400 RNU6-270P-201ENST00000364131 105 ntBASIC2.6□□□□□ -1.99
LIME1Q9H400 RNU6-169P-201ENST00000365336 107 ntBASIC2.6□□□□□ -1.99
LIME1Q9H400 SNORA20.2-201ENST00000383922 131 ntBASIC2.6□□□□□ -1.99
LIME1Q9H400 RNU1-101P-201ENST00000391171 127 ntBASIC2.6□□□□□ -1.99
LIME1Q9H400 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
LIME1Q9H400 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
LIME1Q9H400 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC2.6□□□□□ -1.99
LIME1Q9H400 NUP35P1-201ENST00000422734 947 ntBASIC2.6□□□□□ -1.99
LIME1Q9H400 MED13P1-201ENST00000428342 171 ntBASIC2.6□□□□□ -1.99
LIME1Q9H400 RPL31P35-201ENST00000431058 377 ntBASIC2.6□□□□□ -1.99
LIME1Q9H400 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC2.6□□□□□ -1.99
LIME1Q9H400 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.6□□□□□ -1.99
LIME1Q9H400 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.6□□□□□ -1.99
LIME1Q9H400 TRBV12-1-201ENST00000479785 344 ntBASIC2.6□□□□□ -1.99
LIME1Q9H400 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.6□□□□□ -1.99
LIME1Q9H400 HIGD1AP13-201ENST00000509878 289 ntBASIC2.6□□□□□ -1.99
LIME1Q9H400 MTCO3P7-201ENST00000510008 774 ntBASIC2.6□□□□□ -1.99
LIME1Q9H400 SCGB1D5P-201ENST00000515134 247 ntBASIC2.6□□□□□ -1.99
LIME1Q9H400 RN7SKP43-201ENST00000516173 320 ntBASIC2.6□□□□□ -1.99
LIME1Q9H400 RNU6-1220P-201ENST00000517126 108 ntBASIC2.6□□□□□ -1.99
LIME1Q9H400 IGHV3-76-201ENST00000522465 295 ntBASIC2.6□□□□□ -1.99
LIME1Q9H400 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC2.6□□□□□ -1.99
LIME1Q9H400 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC2.6□□□□□ -1.99
LIME1Q9H400 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC2.6□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms