Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 SNORA48.5-201ENST00000391143 135 ntBASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 RNU6-903P-201ENST00000391270 109 ntBASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 CISD1P1-201ENST00000393907 327 ntBASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 AL136116.1-201ENST00000403591 381 ntBASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 NDUFB4P4-201ENST00000404822 243 ntBASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 AL354719.1-201ENST00000406535 843 ntBASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 RPS12P24-201ENST00000412619 387 ntBASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 AC009237.5-201ENST00000414271 501 ntBASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 RPL7P46-201ENST00000425129 740 ntBASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 AC009237.8-201ENST00000445492 379 ntBASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 ELOCP23-201ENST00000452014 332 ntBASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 EIF4EP3-201ENST00000498782 656 ntBASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 NAF1-205ENST00000509434 385 ntTSL 3 BASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 AC025465.4-201ENST00000513422 638 ntBASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 APOOP4-201ENST00000513530 597 ntBASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 RNU4-29P-201ENST00000515943 174 ntBASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 SNORA31.3-201ENST00000516029 96 ntBASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 RNU4ATAC8P-201ENST00000516196 109 ntBASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 SNORA70.19-201ENST00000516717 90 ntBASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 AC004024.1-201ENST00000549244 247 ntBASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 AC106782.4-201ENST00000568264 210 ntBASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 MIR5004-201ENST00000579078 107 ntBASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 MIR548S-201ENST00000581352 82 ntBASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 AC008521.1-201ENST00000587471 187 ntBASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 BNIP3P9-201ENST00000603714 553 ntBASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 HMGB1P50-201ENST00000605814 607 ntBASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 AF117829.1-206ENST00000621883 3802 ntBASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
PAAF1Q9BRP4 RIOK3P1-201ENST00000418778 1528 ntBASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 CASC19-280ENST00000642102 1351 ntBASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 AC004972.1-201ENST00000623934 2209 ntBASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 ASNSP3-201ENST00000451989 1306 ntBASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 RPL7P26-201ENST00000333817 754 ntBASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 RNU6-451P-201ENST00000362921 107 ntBASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 RNU4-66P-201ENST00000365199 138 ntBASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 UBE2V1P2-201ENST00000397758 440 ntBASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 AC080125.1-201ENST00000414888 684 ntBASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 YPEL5P1-201ENST00000419731 367 ntBASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 AL118520.1-201ENST00000450770 291 ntBASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 RPS4XP2-201ENST00000458402 793 ntBASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 RPL9P32-201ENST00000464118 620 ntBASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 RPS20P22-201ENST00000473700 357 ntBASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 RPS15AP34-201ENST00000487776 387 ntBASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 RNU6-358P-201ENST00000516564 75 ntBASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 BNIP3P30-201ENST00000601184 574 ntBASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 AC107294.1-201ENST00000609524 467 ntBASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 AC010338.1-201ENST00000621823 717 ntBASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 AC024614.3-201ENST00000637860 256 ntBASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 AC099654.14-201ENST00000638599 341 ntBASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 TPTE2P4-201ENST00000258589 1605 ntBASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
PAAF1Q9BRP4 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
PAAF1Q9BRP4 AL354685.2-201ENST00000448218 1447 ntBASIC3.53□□□□□ -1.84
PAAF1Q9BRP4 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
PAAF1Q9BRP4 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.53□□□□□ -1.84
PAAF1Q9BRP4 AC008725.1-201ENST00000605123 2263 ntBASIC3.53□□□□□ -1.84
PAAF1Q9BRP4 OR4G1P-203ENST00000641984 1631 ntBASIC3.53□□□□□ -1.84
PAAF1Q9BRP4 RNU6-1167P-201ENST00000363227 94 ntBASIC3.53□□□□□ -1.84
PAAF1Q9BRP4 RNU6-512P-201ENST00000364438 103 ntBASIC3.53□□□□□ -1.84
PAAF1Q9BRP4 RNU6-550P-201ENST00000391057 101 ntBASIC3.53□□□□□ -1.84
PAAF1Q9BRP4 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.53□□□□□ -1.84
PAAF1Q9BRP4 RNU4-46P-201ENST00000410818 138 ntBASIC3.53□□□□□ -1.84
PAAF1Q9BRP4 RNU6-373P-201ENST00000411247 98 ntBASIC3.53□□□□□ -1.84
PAAF1Q9BRP4 AC002075.2-201ENST00000425207 252 ntBASIC3.53□□□□□ -1.84
PAAF1Q9BRP4 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms