Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC073343.1-201ENST00000328239 651 ntBASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 Y_RNA.318-201ENST00000365131 97 ntBASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 Y_RNA.436-201ENST00000384097 102 ntBASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 MIR558-201ENST00000384920 94 ntBASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 RNU6-817P-201ENST00000391083 104 ntBASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 AL031121.1-201ENST00000406553 254 ntBASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 RNU2-36P-201ENST00000410361 191 ntBASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 ELOCP4-201ENST00000420090 333 ntBASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 FCF1P1-201ENST00000432690 571 ntBASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 Z82210.1-201ENST00000440037 231 ntBASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 PIGFP3-201ENST00000441918 722 ntBASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 KLF3P2-201ENST00000465138 268 ntBASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 RNA5SP367-201ENST00000516557 118 ntBASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 SNORD59.2-201ENST00000516873 68 ntBASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 RNU6-430P-201ENST00000517078 107 ntBASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 RNA5SP291-201ENST00000517222 105 ntBASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 AC090572.1-201ENST00000519251 160 ntBASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 AMZ2P1-203ENST00000565833 850 ntBASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 AC012213.3-201ENST00000577199 777 ntBASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 MIR3913-1-201ENST00000577744 102 ntBASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 AC006566.1-201ENST00000608943 513 ntBASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 AC104073.3-201ENST00000610942 955 ntBASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 UBE2Q2P6-201ENST00000612666 153 ntBASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 AC091834.1-201ENST00000614543 472 ntBASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 AC136475.10-201ENST00000620253 385 ntBASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 AC110994.2-201ENST00000635481 492 ntBASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 AC103988.1-201ENST00000566382 2177 ntBASIC2.9□□□□□ -1.94
CCDC3Q9BQI4 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.9□□□□□ -1.94
CCDC3Q9BQI4 RNU6-1097P-201ENST00000363586 107 ntBASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 RNU6-108P-201ENST00000365558 107 ntBASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 DYNLT3P1-201ENST00000378574 347 ntBASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 RNU6-1103P-201ENST00000384150 107 ntBASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 RNU6-1042P-201ENST00000384204 107 ntBASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 SNORD116-4-201ENST00000384733 96 ntBASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 RNU1-101P-201ENST00000391171 127 ntBASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 NDUFS5P1-201ENST00000405668 289 ntBASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 RNA5SP38-201ENST00000410750 119 ntBASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 ARPC3P1-201ENST00000437218 533 ntBASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 AL135938.1-201ENST00000443141 297 ntBASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 MTATP6P30-201ENST00000443540 664 ntBASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 AC079781.2-201ENST00000446424 169 ntBASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 TPT1P7-201ENST00000458300 517 ntBASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 AL160314.1-201ENST00000490836 438 ntBASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 AC091133.4-201ENST00000511142 308 ntBASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 SCGB1D5P-201ENST00000515134 247 ntBASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 ELOCP29-201ENST00000588193 334 ntBASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 AC002545.1-201ENST00000592511 181 ntBASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 AL136363.2-201ENST00000604173 851 ntBASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 AL365204.3-201ENST00000612448 685 ntBASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC2.9□□□□□ -1.95
CCDC3Q9BQI4 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 AL359693.1-201ENST00000614959 2407 ntBASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 Y_RNA.359-201ENST00000365498 102 ntBASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 RNU6-14P-201ENST00000384630 106 ntBASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 AC245054.2-201ENST00000415639 319 ntBASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 ISCA1P6-201ENST00000427740 390 ntBASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 AC133104.1-201ENST00000429100 218 ntBASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 RPS12P18-201ENST00000442381 270 ntBASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 SNRPGP6-201ENST00000451124 220 ntBASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 OFD1P4Y-201ENST00000455273 1179 ntBASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 AC105252.1-201ENST00000503089 286 ntBASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 AC091435.1-201ENST00000505442 584 ntBASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC2.89□□□□□ -1.95
CCDC3Q9BQI4 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.89□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms