Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AL121871.1-201ENST00000443413 436 ntBASIC2.99□□□□□ -1.93
USP28Q96RU2 IGKV1OR-3-201ENST00000446944 348 ntBASIC2.99□□□□□ -1.93
USP28Q96RU2 AC079448.1-201ENST00000449377 373 ntBASIC2.99□□□□□ -1.93
USP28Q96RU2 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC2.99□□□□□ -1.93
USP28Q96RU2 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC2.99□□□□□ -1.93
USP28Q96RU2 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC2.99□□□□□ -1.93
USP28Q96RU2 RN7SKP132-201ENST00000516001 208 ntBASIC2.99□□□□□ -1.93
USP28Q96RU2 RNA5SP282-201ENST00000516355 108 ntBASIC2.99□□□□□ -1.93
USP28Q96RU2 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC2.99□□□□□ -1.93
USP28Q96RU2 MTCYBP20-201ENST00000524239 1129 ntBASIC2.99□□□□□ -1.93
USP28Q96RU2 AP000867.2-201ENST00000532468 320 ntBASIC2.99□□□□□ -1.93
USP28Q96RU2 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC2.99□□□□□ -1.93
USP28Q96RU2 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC2.99□□□□□ -1.93
USP28Q96RU2 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC2.99□□□□□ -1.93
USP28Q96RU2 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC2.99□□□□□ -1.93
USP28Q96RU2 AC010546.1-201ENST00000569391 485 ntBASIC2.99□□□□□ -1.93
USP28Q96RU2 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC2.99□□□□□ -1.93
USP28Q96RU2 RPL23AP78-201ENST00000599928 470 ntBASIC2.99□□□□□ -1.93
USP28Q96RU2 AL359999.1-201ENST00000604513 294 ntBASIC2.99□□□□□ -1.93
USP28Q96RU2 AL022099.1-201ENST00000604551 712 ntBASIC2.99□□□□□ -1.93
USP28Q96RU2 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC2.99□□□□□ -1.93
USP28Q96RU2 AC009268.2-201ENST00000621925 457 ntBASIC2.99□□□□□ -1.93
USP28Q96RU2 PISRT1-201ENST00000626175 531 ntBASIC2.99□□□□□ -1.93
USP28Q96RU2 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
USP28Q96RU2 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
USP28Q96RU2 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.99□□□□□ -1.93
USP28Q96RU2 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
USP28Q96RU2 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
USP28Q96RU2 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.98□□□□□ -1.93
USP28Q96RU2 Y_RNA.582-201ENST00000391023 95 ntBASIC2.98□□□□□ -1.93
USP28Q96RU2 RPL21P75-201ENST00000396599 483 ntBASIC2.98□□□□□ -1.93
USP28Q96RU2 RPL21P28-201ENST00000401418 483 ntBASIC2.98□□□□□ -1.93
USP28Q96RU2 AL592114.1-201ENST00000403842 483 ntBASIC2.98□□□□□ -1.93
USP28Q96RU2 USP9YP20-201ENST00000419224 558 ntBASIC2.98□□□□□ -1.93
USP28Q96RU2 RPL31P35-201ENST00000431058 377 ntBASIC2.98□□□□□ -1.93
USP28Q96RU2 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC2.98□□□□□ -1.93
USP28Q96RU2 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC2.98□□□□□ -1.93
USP28Q96RU2 NDUFB4P6-201ENST00000436819 366 ntBASIC2.98□□□□□ -1.93
USP28Q96RU2 AC073614.1-201ENST00000438690 650 ntBASIC2.98□□□□□ -1.93
USP28Q96RU2 DNAJC19P4-201ENST00000440115 345 ntBASIC2.98□□□□□ -1.93
USP28Q96RU2 RPS24P13-201ENST00000442520 397 ntBASIC2.98□□□□□ -1.93
USP28Q96RU2 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC2.98□□□□□ -1.93
USP28Q96RU2 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC2.98□□□□□ -1.93
USP28Q96RU2 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC2.98□□□□□ -1.93
USP28Q96RU2 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC2.98□□□□□ -1.93
USP28Q96RU2 RPL21P39-201ENST00000463605 483 ntBASIC2.98□□□□□ -1.93
USP28Q96RU2 RPL21P93-201ENST00000480465 489 ntBASIC2.98□□□□□ -1.93
USP28Q96RU2 AC233702.1-201ENST00000482905 502 ntBASIC2.98□□□□□ -1.93
USP28Q96RU2 AC087190.1-201ENST00000484462 480 ntBASIC2.98□□□□□ -1.93
USP28Q96RU2 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC2.98□□□□□ -1.93
USP28Q96RU2 AC093591.1-201ENST00000491435 481 ntBASIC2.98□□□□□ -1.93
USP28Q96RU2 RPL21P16-201ENST00000495531 483 ntBASIC2.98□□□□□ -1.93
USP28Q96RU2 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC2.98□□□□□ -1.93
USP28Q96RU2 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.98□□□□□ -1.93
USP28Q96RU2 TBCAP3-201ENST00000512475 312 ntBASIC2.98□□□□□ -1.93
USP28Q96RU2 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC2.98□□□□□ -1.93
USP28Q96RU2 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC2.98□□□□□ -1.93
USP28Q96RU2 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC2.98□□□□□ -1.93
USP28Q96RU2 AC125611.2-201ENST00000551907 647 ntBASIC2.98□□□□□ -1.93
USP28Q96RU2 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC2.98□□□□□ -1.93
USP28Q96RU2 MIR3146-201ENST00000580367 79 ntBASIC2.98□□□□□ -1.93
USP28Q96RU2 AC068790.3-201ENST00000602988 553 ntBASIC2.98□□□□□ -1.93
USP28Q96RU2 AL022154.1-201ENST00000604698 785 ntBASIC2.98□□□□□ -1.93
USP28Q96RU2 AL359740.1-201ENST00000624340 592 ntBASIC2.98□□□□□ -1.93
USP28Q96RU2 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC2.98□□□□□ -1.93
USP28Q96RU2 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
USP28Q96RU2 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
USP28Q96RU2 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.98□□□□□ -1.93
USP28Q96RU2 AL138713.1-201ENST00000624026 2130 ntBASIC2.98□□□□□ -1.93
USP28Q96RU2 SNORA25.6-201ENST00000364121 118 ntBASIC2.97□□□□□ -1.93
USP28Q96RU2 RNU1-100P-201ENST00000365255 165 ntBASIC2.97□□□□□ -1.93
USP28Q96RU2 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC2.97□□□□□ -1.93
USP28Q96RU2 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
USP28Q96RU2 MIR128-1-201ENST00000384921 82 ntBASIC2.97□□□□□ -1.93
USP28Q96RU2 RNU6-882P-201ENST00000391025 103 ntBASIC2.97□□□□□ -1.93
USP28Q96RU2 AL360182.1-201ENST00000397433 468 ntBASIC2.97□□□□□ -1.93
USP28Q96RU2 RPS3AP24-201ENST00000407896 734 ntBASIC2.97□□□□□ -1.93
USP28Q96RU2 UBE2Q2P12-201ENST00000414573 204 ntBASIC2.97□□□□□ -1.93
USP28Q96RU2 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.97□□□□□ -1.93
USP28Q96RU2 RPS15AP12-201ENST00000419498 388 ntBASIC2.97□□□□□ -1.93
USP28Q96RU2 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC2.97□□□□□ -1.93
USP28Q96RU2 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC2.97□□□□□ -1.93
USP28Q96RU2 TIMM9P1-201ENST00000436122 256 ntBASIC2.97□□□□□ -1.93
USP28Q96RU2 AC234775.1-201ENST00000454247 670 ntBASIC2.97□□□□□ -1.93
USP28Q96RU2 RBM43P1-201ENST00000476891 1081 ntBASIC2.97□□□□□ -1.93
USP28Q96RU2 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC2.97□□□□□ -1.93
USP28Q96RU2 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC2.97□□□□□ -1.93
USP28Q96RU2 AC010587.1-201ENST00000505809 469 ntBASIC2.97□□□□□ -1.93
USP28Q96RU2 AC098799.2-201ENST00000509466 868 ntBASIC2.97□□□□□ -1.93
USP28Q96RU2 AC006445.2-201ENST00000510061 472 ntBASIC2.97□□□□□ -1.93
USP28Q96RU2 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC2.97□□□□□ -1.93
USP28Q96RU2 SNORA70.16-201ENST00000516390 95 ntBASIC2.97□□□□□ -1.93
USP28Q96RU2 AC090136.1-201ENST00000520009 240 ntBASIC2.97□□□□□ -1.93
USP28Q96RU2 CKS1BP7-201ENST00000522230 235 ntBASIC2.97□□□□□ -1.93
USP28Q96RU2 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC2.97□□□□□ -1.93
USP28Q96RU2 ARL1-211ENST00000551828 776 ntTSL 5 BASIC2.97□□□□□ -1.93
USP28Q96RU2 AL133153.1-201ENST00000557756 303 ntBASIC2.97□□□□□ -1.93
USP28Q96RU2 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC2.97□□□□□ -1.93
USP28Q96RU2 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.97□□□□□ -1.93
USP28Q96RU2 HSPE1P7-201ENST00000604681 321 ntBASIC2.97□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms