Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 RPL36AP53-201ENST00000432891 316 ntBASIC2.54□□□□□ -2
ZNF540Q8NDQ6 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.54□□□□□ -2
ZNF540Q8NDQ6 AC004924.1-201ENST00000480160 781 ntBASIC2.54□□□□□ -2
ZNF540Q8NDQ6 MTND2P14-201ENST00000482139 351 ntBASIC2.54□□□□□ -2
ZNF540Q8NDQ6 AC106872.3-201ENST00000495104 446 ntBASIC2.54□□□□□ -2
ZNF540Q8NDQ6 AC010587.2-201ENST00000511727 448 ntBASIC2.54□□□□□ -2
ZNF540Q8NDQ6 SCGB1D5P-201ENST00000515134 247 ntBASIC2.54□□□□□ -2
ZNF540Q8NDQ6 RNU6-1129P-201ENST00000515964 104 ntBASIC2.54□□□□□ -2
ZNF540Q8NDQ6 RNU5A-4P-201ENST00000516588 111 ntBASIC2.54□□□□□ -2
ZNF540Q8NDQ6 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.54□□□□□ -2
ZNF540Q8NDQ6 MTND2P38-201ENST00000522536 667 ntBASIC2.54□□□□□ -2
ZNF540Q8NDQ6 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC2.54□□□□□ -2
ZNF540Q8NDQ6 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC2.54□□□□□ -2
ZNF540Q8NDQ6 AC145350.1-201ENST00000567426 208 ntBASIC2.54□□□□□ -2
ZNF540Q8NDQ6 MIR3167-201ENST00000579623 85 ntBASIC2.54□□□□□ -2
ZNF540Q8NDQ6 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.54□□□□□ -2
ZNF540Q8NDQ6 ZNF861P-201ENST00000588126 639 ntBASIC2.54□□□□□ -2
ZNF540Q8NDQ6 AL139418.1-201ENST00000613613 177 ntBASIC2.54□□□□□ -2
ZNF540Q8NDQ6 ATP5A1P2-202ENST00000616464 443 ntBASIC2.54□□□□□ -2
ZNF540Q8NDQ6 AC025048.6-202ENST00000627667 438 ntBASIC2.54□□□□□ -2
ZNF540Q8NDQ6 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC2.54□□□□□ -2
ZNF540Q8NDQ6 AL355596.1-201ENST00000565399 3996 ntBASIC2.54□□□□□ -2
ZNF540Q8NDQ6 AP000776.1-201ENST00000530032 1663 ntBASIC2.53□□□□□ -2
ZNF540Q8NDQ6 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.53□□□□□ -2
ZNF540Q8NDQ6 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.53□□□□□ -2
ZNF540Q8NDQ6 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.53□□□□□ -2
ZNF540Q8NDQ6 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC2.53□□□□□ -2
ZNF540Q8NDQ6 SNORA25.6-201ENST00000364121 118 ntBASIC2.53□□□□□ -2
ZNF540Q8NDQ6 DEFA7P-201ENST00000382676 285 ntBASIC2.53□□□□□ -2
ZNF540Q8NDQ6 SNORA54-201ENST00000384281 123 ntBASIC2.53□□□□□ -2
ZNF540Q8NDQ6 RNU6-19P-201ENST00000384718 107 ntBASIC2.53□□□□□ -2
ZNF540Q8NDQ6 RNU6-278P-201ENST00000390945 109 ntBASIC2.53□□□□□ -2
ZNF540Q8NDQ6 AL359634.1-202ENST00000404721 284 ntBASIC2.53□□□□□ -2
ZNF540Q8NDQ6 ERMN-204ENST00000409925 556 ntTSL 4 BASIC2.53□□□□□ -2
ZNF540Q8NDQ6 RNU4-72P-201ENST00000410754 173 ntBASIC2.53□□□□□ -2
ZNF540Q8NDQ6 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC2.53□□□□□ -2
ZNF540Q8NDQ6 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC2.53□□□□□ -2
ZNF540Q8NDQ6 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.53□□□□□ -2
ZNF540Q8NDQ6 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC2.53□□□□□ -2
ZNF540Q8NDQ6 FABP5P14-201ENST00000437273 393 ntBASIC2.53□□□□□ -2
ZNF540Q8NDQ6 AL161651.1-201ENST00000440882 223 ntBASIC2.53□□□□□ -2
ZNF540Q8NDQ6 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC2.53□□□□□ -2
ZNF540Q8NDQ6 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC2.53□□□□□ -2
ZNF540Q8NDQ6 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.53□□□□□ -2
ZNF540Q8NDQ6 NIPA2P5-201ENST00000452282 464 ntBASIC2.53□□□□□ -2
ZNF540Q8NDQ6 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC2.53□□□□□ -2
ZNF540Q8NDQ6 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC2.53□□□□□ -2
ZNF540Q8NDQ6 AC073901.1-201ENST00000462471 408 ntBASIC2.53□□□□□ -2
ZNF540Q8NDQ6 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC2.53□□□□□ -2
ZNF540Q8NDQ6 UBE2DNL-203ENST00000474922 222 ntBASIC2.53□□□□□ -2
ZNF540Q8NDQ6 RPL22P13-201ENST00000493291 347 ntBASIC2.53□□□□□ -2
ZNF540Q8NDQ6 AC093534.1-201ENST00000504977 132 ntBASIC2.53□□□□□ -2
ZNF540Q8NDQ6 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC2.53□□□□□ -2
ZNF540Q8NDQ6 AC006199.1-201ENST00000548728 219 ntBASIC2.53□□□□□ -2
ZNF540Q8NDQ6 DUXAP1-201ENST00000556632 463 ntBASIC2.53□□□□□ -2
ZNF540Q8NDQ6 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC2.53□□□□□ -2
ZNF540Q8NDQ6 MYL12BP1-201ENST00000569826 507 ntBASIC2.53□□□□□ -2
ZNF540Q8NDQ6 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.53□□□□□ -2
ZNF540Q8NDQ6 AC105245.1-201ENST00000581934 244 ntBASIC2.53□□□□□ -2
ZNF540Q8NDQ6 AL360219.1-201ENST00000610230 366 ntBASIC2.53□□□□□ -2
ZNF540Q8NDQ6 AP000484.1-201ENST00000620067 1252 ntBASIC2.53□□□□□ -2
ZNF540Q8NDQ6 AC112204.3-201ENST00000623822 332 ntBASIC2.53□□□□□ -2
ZNF540Q8NDQ6 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC2.53□□□□□ -2
ZNF540Q8NDQ6 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.53□□□□□ -2
ZNF540Q8NDQ6 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2.01
ZNF540Q8NDQ6 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 MTND5P33-201ENST00000571250 1450 ntBASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 FAM133CP-201ENST00000332869 704 ntBASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 RNU6-1284P-201ENST00000363701 100 ntBASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 MIR19A-201ENST00000384878 82 ntBASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 MIR1305-201ENST00000408300 86 ntBASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 USP9YP6-201ENST00000413550 854 ntBASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 ISCA1P1-201ENST00000426679 387 ntBASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 AC104651.1-201ENST00000427559 735 ntBASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 AC025750.2-201ENST00000442609 450 ntBASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 IFNA11P-201ENST00000446352 526 ntBASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 RGS5-217ENST00000451759 835 ntTSL 3 BASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 FABP5P15-201ENST00000453566 214 ntBASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 AL133241.1-201ENST00000556832 487 ntBASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 AL354943.1-201ENST00000572103 781 ntBASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 AC060766.3-201ENST00000591442 263 ntBASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 AC068790.3-201ENST00000602988 553 ntBASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 AC112220.3-201ENST00000605502 502 ntBASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 AC048344.4-201ENST00000619744 527 ntBASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 AC096644.4-201ENST00000563417 2912 ntBASIC2.52□□□□□ -2.01
ZNF540Q8NDQ6 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 126.4 ms