Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 RN7SKP32-201ENST00000410167 303 ntBASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 SNORA57.3-201ENST00000411095 141 ntBASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 AL592148.1-201ENST00000413568 445 ntBASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 SKA2P1-201ENST00000425592 390 ntBASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 HMGB1P9-201ENST00000429856 646 ntBASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 NUTF2P3-201ENST00000448540 384 ntBASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 MRPS31P2-201ENST00000451581 518 ntBASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 RPL26P9-201ENST00000457466 433 ntBASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 snoU13.28-201ENST00000459235 104 ntBASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 AC010265.1-201ENST00000513509 211 ntBASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 SNORA31.1-201ENST00000515993 133 ntBASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 RNU1-86P-201ENST00000516108 154 ntBASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 SNORA31.5-201ENST00000516190 133 ntBASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 RNU1-107P-201ENST00000516617 154 ntBASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 RNA5SP380-201ENST00000517190 98 ntBASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 NDUFB9P3-201ENST00000521269 501 ntBASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 TRAV8-5-201ENST00000537369 341 ntBASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 MIR4782-201ENST00000577987 79 ntBASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 AC091042.1-201ENST00000579213 173 ntBASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 TEX41-238ENST00000604253 709 ntTSL 5 BASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 AC002044.1-201ENST00000606707 158 ntBASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 AC019193.2-201ENST00000610012 634 ntBASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 AC025253.1-201ENST00000613623 543 ntBASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 U3.53-201ENST00000628922 216 ntBASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC28AQ8IWP9 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 RN7SKP280-201ENST00000364196 304 ntBASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 RNU6-805P-201ENST00000365643 106 ntBASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 AL583835.1-201ENST00000399570 407 ntBASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 SNORA11B-201ENST00000408175 129 ntBASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 MTND3P8-201ENST00000412909 339 ntBASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 CYCSP33-201ENST00000414485 327 ntBASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 RPS12P10-201ENST00000427031 377 ntBASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 AC010099.1-201ENST00000455434 375 ntBASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 U3.44-201ENST00000458938 192 ntBASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 RN7SL610P-201ENST00000463845 291 ntBASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 AC091951.2-201ENST00000500762 203 ntBASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 MTCO1P35-201ENST00000515270 228 ntBASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 RNU4-49P-201ENST00000516080 140 ntBASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 RNU6-875P-201ENST00000516488 106 ntBASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 RNU6-1069P-201ENST00000516612 133 ntBASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 SNORA25.17-201ENST00000517184 124 ntBASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 AL391261.3-201ENST00000557194 520 ntBASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 MIR4738-201ENST00000579134 87 ntBASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 AC012468.1-201ENST00000604888 430 ntBASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 AL121757.2-201ENST00000611223 313 ntBASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 AC104260.1-201ENST00000616660 539 ntBASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 MIR6853-201ENST00000619642 74 ntBASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 AL513302.2-201ENST00000562313 1842 ntBASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC28AQ8IWP9 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 Y_RNA.70-201ENST00000362886 110 ntBASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 RNU6-1013P-201ENST00000384180 107 ntBASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 RNU6-831P-201ENST00000384548 107 ntBASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 MIR34A-201ENST00000385130 110 ntBASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 RNU6-1009P-201ENST00000390996 107 ntBASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 AL445189.1-201ENST00000405722 338 ntBASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 RNA5SP293-201ENST00000410527 113 ntBASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 TOMM20P4-201ENST00000427861 435 ntBASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 AL162591.2-201ENST00000449634 317 ntBASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 RPS3AP41-201ENST00000462701 778 ntBASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 AC128713.1-201ENST00000471495 306 ntBASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 AC117503.1-201ENST00000472241 394 ntBASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 RNU6-1183P-201ENST00000517054 60 ntBASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 114 ms