Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 RNU6-827P-201ENST00000365553 106 ntBASIC4.41□□□□□ -1.7
UBE3DQ7Z6J8 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC4.41□□□□□ -1.7
UBE3DQ7Z6J8 RN7SKP267-201ENST00000410381 285 ntBASIC4.41□□□□□ -1.7
UBE3DQ7Z6J8 RNU6-121P-201ENST00000410525 99 ntBASIC4.41□□□□□ -1.7
UBE3DQ7Z6J8 RNU6-130P-201ENST00000411112 103 ntBASIC4.41□□□□□ -1.7
UBE3DQ7Z6J8 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC4.41□□□□□ -1.7
UBE3DQ7Z6J8 AL356867.1-201ENST00000429623 299 ntBASIC4.41□□□□□ -1.7
UBE3DQ7Z6J8 AL358472.1-201ENST00000431295 329 ntBASIC4.41□□□□□ -1.7
UBE3DQ7Z6J8 RPL23AP45-201ENST00000476406 468 ntBASIC4.41□□□□□ -1.7
UBE3DQ7Z6J8 AC108145.1-201ENST00000503770 153 ntBASIC4.41□□□□□ -1.7
UBE3DQ7Z6J8 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC4.41□□□□□ -1.7
UBE3DQ7Z6J8 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.41□□□□□ -1.7
UBE3DQ7Z6J8 AC022868.1-201ENST00000517767 391 ntBASIC4.41□□□□□ -1.7
UBE3DQ7Z6J8 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.41□□□□□ -1.7
UBE3DQ7Z6J8 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC4.41□□□□□ -1.7
UBE3DQ7Z6J8 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
UBE3DQ7Z6J8 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
UBE3DQ7Z6J8 AC107918.3-201ENST00000533272 382 ntBASIC4.41□□□□□ -1.7
UBE3DQ7Z6J8 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.41□□□□□ -1.7
UBE3DQ7Z6J8 AL442163.3-201ENST00000554110 156 ntBASIC4.41□□□□□ -1.7
UBE3DQ7Z6J8 AC104581.2-201ENST00000572227 430 ntBASIC4.41□□□□□ -1.7
UBE3DQ7Z6J8 AC234771.5-201ENST00000600161 514 ntBASIC4.41□□□□□ -1.7
UBE3DQ7Z6J8 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC4.41□□□□□ -1.7
UBE3DQ7Z6J8 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
UBE3DQ7Z6J8 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
UBE3DQ7Z6J8 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
UBE3DQ7Z6J8 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
UBE3DQ7Z6J8 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
UBE3DQ7Z6J8 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
UBE3DQ7Z6J8 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
UBE3DQ7Z6J8 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.7
UBE3DQ7Z6J8 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.7
UBE3DQ7Z6J8 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
UBE3DQ7Z6J8 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.4□□□□□ -1.7
UBE3DQ7Z6J8 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
UBE3DQ7Z6J8 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.4□□□□□ -1.7
UBE3DQ7Z6J8 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
UBE3DQ7Z6J8 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.4□□□□□ -1.7
UBE3DQ7Z6J8 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
UBE3DQ7Z6J8 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.4□□□□□ -1.7
UBE3DQ7Z6J8 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.4□□□□□ -1.7
UBE3DQ7Z6J8 AL391987.6-201ENST00000305671 199 ntBASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 Y_RNA.458-201ENST00000384240 102 ntBASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 MIR34A-201ENST00000385130 110 ntBASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 MRPL35P1-201ENST00000404272 572 ntBASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 MORN2-203ENST00000409131 544 ntTSL 5 BASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 RNA5SP494-201ENST00000410653 129 ntBASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 RPL21P38-201ENST00000418090 167 ntBASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 AL513124.1-201ENST00000450410 614 ntBASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 SCARNA10-201ENST00000459255 330 ntBASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 RPL7P5-201ENST00000471472 736 ntBASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 AL049874.1-201ENST00000489560 388 ntBASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 MLLT10P2-201ENST00000506434 249 ntBASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 IGKV2-23-201ENST00000518729 323 ntBASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 FAM60BP-201ENST00000578364 658 ntBASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 AC008121.1-201ENST00000603244 268 ntBASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 BX284668.6-201ENST00000606899 438 ntBASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 Mico1.1-201ENST00000611698 204 ntBASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 AL161629.2-201ENST00000615347 275 ntBASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 AL360181.4-201ENST00000621752 134 ntBASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 AC006065.5-201ENST00000623427 349 ntBASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 LINC01355-201ENST00000566551 5444 ntBASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 OR4G2P-202ENST00000641004 1759 ntBASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 AL359693.1-201ENST00000614959 2407 ntBASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
UBE3DQ7Z6J8 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 AP000542.2-201ENST00000623199 6179 ntBASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 AC021146.4-201ENST00000309229 279 ntBASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 SNORD50.1-201ENST00000362987 71 ntBASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 Y_RNA.105-201ENST00000363182 111 ntBASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 RN7SKP227-201ENST00000364445 330 ntBASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 RNY3P4-201ENST00000384428 101 ntBASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 MIR190B-201ENST00000401119 79 ntBASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 AL133270.1-201ENST00000402635 279 ntBASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 NDUFB4P7-201ENST00000423198 363 ntBASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 Z74021.1-201ENST00000423610 407 ntBASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 MTND3P9-201ENST00000429526 346 ntBASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 BX679664.1-201ENST00000434429 253 ntBASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 AC079354.2-201ENST00000453523 154 ntBASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 ISCUP1-201ENST00000454451 448 ntBASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 RNU6-612P-201ENST00000516909 102 ntBASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 HIGD1AP5-201ENST00000529959 259 ntBASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 177.5 ms