Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.45□□□□□ -2.18
USP54Q70EL1 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC1.45□□□□□ -2.18
USP54Q70EL1 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC1.45□□□□□ -2.18
USP54Q70EL1 HSBP1P1-201ENST00000555205 166 ntBASIC1.45□□□□□ -2.18
USP54Q70EL1 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC1.45□□□□□ -2.18
USP54Q70EL1 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC1.45□□□□□ -2.18
USP54Q70EL1 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC1.45□□□□□ -2.18
USP54Q70EL1 AGGF1P5-201ENST00000567900 919 ntBASIC1.45□□□□□ -2.18
USP54Q70EL1 OR1M4P-201ENST00000589199 287 ntBASIC1.45□□□□□ -2.18
USP54Q70EL1 VN1R107P-201ENST00000601784 209 ntBASIC1.45□□□□□ -2.18
USP54Q70EL1 AC103710.4-201ENST00000609301 899 ntBASIC1.45□□□□□ -2.18
USP54Q70EL1 AL445493.3-201ENST00000619568 477 ntBASIC1.45□□□□□ -2.18
USP54Q70EL1 AC097655.1-201ENST00000635075 318 ntBASIC1.45□□□□□ -2.18
USP54Q70EL1 AP003399.1-201ENST00000637534 361 ntBASIC1.45□□□□□ -2.18
USP54Q70EL1 ZNF663P-202ENST00000641770 1131 ntBASIC1.45□□□□□ -2.18
USP54Q70EL1 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
USP54Q70EL1 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC1.45□□□□□ -2.18
USP54Q70EL1 RNU4-23P-201ENST00000362839 140 ntBASIC1.45□□□□□ -2.18
USP54Q70EL1 ERHP2-201ENST00000402323 299 ntBASIC1.45□□□□□ -2.18
USP54Q70EL1 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC1.45□□□□□ -2.18
USP54Q70EL1 AC092047.1-201ENST00000424997 240 ntBASIC1.45□□□□□ -2.18
USP54Q70EL1 MTCO1P57-201ENST00000432182 261 ntBASIC1.45□□□□□ -2.18
USP54Q70EL1 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC1.45□□□□□ -2.18
USP54Q70EL1 OSTCP8-201ENST00000445117 448 ntBASIC1.45□□□□□ -2.18
USP54Q70EL1 MTCYBP3-201ENST00000445588 1137 ntBASIC1.45□□□□□ -2.18
USP54Q70EL1 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC1.45□□□□□ -2.18
USP54Q70EL1 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC1.45□□□□□ -2.18
USP54Q70EL1 RPS29P23-201ENST00000458635 123 ntBASIC1.45□□□□□ -2.18
USP54Q70EL1 NTS-203ENST00000551529 801 ntTSL 3 BASIC1.45□□□□□ -2.18
USP54Q70EL1 AC009268.1-201ENST00000561352 1203 ntBASIC1.45□□□□□ -2.18
USP54Q70EL1 AP006248.3-201ENST00000623580 594 ntBASIC1.45□□□□□ -2.18
USP54Q70EL1 RNU6-1339P-201ENST00000363574 91 ntBASIC1.44□□□□□ -2.18
USP54Q70EL1 SNORA3A-201ENST00000364113 130 ntBASIC1.44□□□□□ -2.18
USP54Q70EL1 RNA5SP465-201ENST00000391195 109 ntBASIC1.44□□□□□ -2.18
USP54Q70EL1 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC1.44□□□□□ -2.18
USP54Q70EL1 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC1.44□□□□□ -2.18
USP54Q70EL1 HMGB1P49-201ENST00000418882 569 ntBASIC1.44□□□□□ -2.18
USP54Q70EL1 SEPT2P1-201ENST00000419651 180 ntBASIC1.44□□□□□ -2.18
USP54Q70EL1 SNRPEP10-201ENST00000420249 274 ntBASIC1.44□□□□□ -2.18
USP54Q70EL1 AL035410.1-201ENST00000427409 427 ntBASIC1.44□□□□□ -2.18
USP54Q70EL1 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC1.44□□□□□ -2.18
USP54Q70EL1 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC1.44□□□□□ -2.18
USP54Q70EL1 TPRKBP1-201ENST00000456243 481 ntBASIC1.44□□□□□ -2.18
USP54Q70EL1 RNU7-23P-201ENST00000459465 62 ntBASIC1.44□□□□□ -2.18
USP54Q70EL1 NDUFB4P2-201ENST00000509515 391 ntBASIC1.44□□□□□ -2.18
USP54Q70EL1 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC1.44□□□□□ -2.18
USP54Q70EL1 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC1.44□□□□□ -2.18
USP54Q70EL1 AC008676.3-201ENST00000521237 435 ntBASIC1.44□□□□□ -2.18
USP54Q70EL1 RPL21P5-201ENST00000554662 472 ntBASIC1.44□□□□□ -2.18
USP54Q70EL1 SUB1P4-201ENST00000566062 339 ntBASIC1.44□□□□□ -2.18
USP54Q70EL1 AC022662.1-201ENST00000580252 331 ntBASIC1.44□□□□□ -2.18
USP54Q70EL1 AL355877.2-201ENST00000603670 358 ntBASIC1.44□□□□□ -2.18
USP54Q70EL1 AC242628.1-201ENST00000606810 391 ntBASIC1.44□□□□□ -2.18
USP54Q70EL1 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC1.44□□□□□ -2.18
USP54Q70EL1 AC095038.3-201ENST00000634439 195 ntBASIC1.44□□□□□ -2.18
USP54Q70EL1 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC1.44□□□□□ -2.18
USP54Q70EL1 CCT4P2-201ENST00000233836 1548 ntBASIC1.43□□□□□ -2.18
USP54Q70EL1 RNU6-152P-201ENST00000384037 107 ntBASIC1.43□□□□□ -2.18
USP54Q70EL1 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.43□□□□□ -2.18
USP54Q70EL1 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC1.43□□□□□ -2.18
USP54Q70EL1 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC1.43□□□□□ -2.18
USP54Q70EL1 GPM6BP3-201ENST00000442797 145 ntBASIC1.43□□□□□ -2.18
USP54Q70EL1 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC1.43□□□□□ -2.18
USP54Q70EL1 RNA5SP384-201ENST00000516615 116 ntBASIC1.43□□□□□ -2.18
USP54Q70EL1 HAUS1P3-201ENST00000523909 662 ntBASIC1.43□□□□□ -2.18
USP54Q70EL1 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
USP54Q70EL1 DDX43P2-201ENST00000604753 1354 ntBASIC1.43□□□□□ -2.18
USP54Q70EL1 ZBTB8OSP1-201ENST00000342688 498 ntBASIC1.42□□□□□ -2.18
USP54Q70EL1 U8.3-201ENST00000363321 132 ntBASIC1.42□□□□□ -2.18
USP54Q70EL1 MIR525-201ENST00000384978 85 ntBASIC1.42□□□□□ -2.18
USP54Q70EL1 RNU2-47P-201ENST00000410649 186 ntBASIC1.42□□□□□ -2.18
USP54Q70EL1 ZNF92P1Y-201ENST00000415010 1191 ntBASIC1.42□□□□□ -2.18
USP54Q70EL1 AL356867.1-201ENST00000429623 299 ntBASIC1.42□□□□□ -2.18
USP54Q70EL1 RAD1P2-201ENST00000446414 663 ntBASIC1.42□□□□□ -2.18
USP54Q70EL1 PSPHP1-201ENST00000450062 261 ntBASIC1.42□□□□□ -2.18
USP54Q70EL1 CABYRP1-201ENST00000465493 1045 ntBASIC1.42□□□□□ -2.18
USP54Q70EL1 AC015724.1-201ENST00000478577 156 ntBASIC1.42□□□□□ -2.18
USP54Q70EL1 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
USP54Q70EL1 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.42□□□□□ -2.18
USP54Q70EL1 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC1.42□□□□□ -2.18
USP54Q70EL1 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC1.42□□□□□ -2.18
USP54Q70EL1 ANKRD36BP2-206ENST00000575193 1245 ntBASIC1.42□□□□□ -2.18
USP54Q70EL1 AP003400.6-201ENST00000624698 740 ntBASIC1.42□□□□□ -2.18
USP54Q70EL1 AL590396.2-201ENST00000636511 1041 ntBASIC1.42□□□□□ -2.18
USP54Q70EL1 RNU6-444P-201ENST00000383988 108 ntBASIC1.42□□□□□ -2.18
USP54Q70EL1 RNU6-1035P-201ENST00000384477 107 ntBASIC1.42□□□□□ -2.18
USP54Q70EL1 PTGES3P2-201ENST00000407942 482 ntBASIC1.42□□□□□ -2.18
USP54Q70EL1 RNU2-32P-201ENST00000411193 191 ntBASIC1.42□□□□□ -2.18
USP54Q70EL1 BEND7P1-201ENST00000422058 457 ntBASIC1.42□□□□□ -2.18
USP54Q70EL1 AC018630.2-202ENST00000422992 927 ntBASIC1.42□□□□□ -2.18
USP54Q70EL1 AIMP1P2-201ENST00000425294 312 ntBASIC1.42□□□□□ -2.18
USP54Q70EL1 RPP40P1-201ENST00000426762 456 ntBASIC1.42□□□□□ -2.18
USP54Q70EL1 MTND2P21-201ENST00000436242 1042 ntBASIC1.42□□□□□ -2.18
USP54Q70EL1 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.42□□□□□ -2.18
USP54Q70EL1 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC1.42□□□□□ -2.18
USP54Q70EL1 AC097493.1-201ENST00000463958 372 ntBASIC1.42□□□□□ -2.18
USP54Q70EL1 AC105252.1-201ENST00000503089 286 ntBASIC1.42□□□□□ -2.18
USP54Q70EL1 AC147055.4-201ENST00000504399 745 ntBASIC1.42□□□□□ -2.18
USP54Q70EL1 RNU6-798P-201ENST00000516912 103 ntBASIC1.42□□□□□ -2.18
USP54Q70EL1 OR5AK1P-201ENST00000524837 922 ntBASIC1.42□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms