| HES3 | Q5TGS1 | ZNF720P1-201 | ENST00000562403 | 1939 nt | BASIC | 1.79 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | NEDD4-205 | ENST00000506154 | 6751 nt | TSL 1 (best) BASIC | 1.79 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | RNY1P10-201 | ENST00000363268 | 113 nt | BASIC | 1.79 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | CCNG1P1-201 | ENST00000406783 | 885 nt | BASIC | 1.79 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | AL391863.2-201 | ENST00000411838 | 681 nt | TSL 2 BASIC | 1.79 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | USP9YP27-201 | ENST00000418455 | 438 nt | BASIC | 1.79 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | MAMDC2-AS1-203 | ENST00000420573 | 339 nt | TSL 3 BASIC | 1.79 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | USP9YP21-201 | ENST00000420603 | 432 nt | BASIC | 1.79 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | AC007919.1-201 | ENST00000429380 | 217 nt | BASIC | 1.79 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | AL138775.1-201 | ENST00000429539 | 575 nt | TSL 1 (best) BASIC | 1.79 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | HMGB1P9-201 | ENST00000429856 | 646 nt | BASIC | 1.79 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | USP12PX-201 | ENST00000432383 | 1057 nt | BASIC | 1.79 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | LINC00529-201 | ENST00000443854 | 241 nt | TSL 2 BASIC | 1.79 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | ATG12P2-201 | ENST00000456830 | 416 nt | BASIC | 1.79 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | AC108734.3-201 | ENST00000481241 | 1165 nt | BASIC | 1.79 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | AC069528.1-202 | ENST00000482888 | 637 nt | BASIC | 1.79 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | AC007182.2-201 | ENST00000489251 | 402 nt | BASIC | 1.79 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | AC021698.1-201 | ENST00000524858 | 716 nt | TSL 3 BASIC | 1.79 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | AC121758.2-201 | ENST00000553271 | 193 nt | BASIC | 1.79 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | BLOC1S6-207 | ENST00000565216 | 573 nt | TSL 3 BASIC | 1.79 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | AC091588.1-201 | ENST00000578504 | 359 nt | TSL 3 BASIC | 1.79 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | AC002545.1-201 | ENST00000592511 | 181 nt | BASIC | 1.79 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | AC022150.3-201 | ENST00000599143 | 880 nt | TSL 5 BASIC | 1.79 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | AC009314.1-201 | ENST00000603871 | 304 nt | BASIC | 1.79 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | AL359821.1-201 | ENST00000605519 | 182 nt | BASIC | 1.79 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | AC009090.3-201 | ENST00000616553 | 565 nt | BASIC | 1.79 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | AC073592.7-201 | ENST00000623659 | 507 nt | BASIC | 1.79 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | MTND4P27-201 | ENST00000450813 | 1354 nt | BASIC | 1.79 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | RRAS2-211 | ENST00000537760 | 2034 nt | TSL 2 BASIC | 1.79 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | AL138713.1-201 | ENST00000624026 | 2130 nt | BASIC | 1.79 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | CAPS2-203 | ENST00000393284 | 3430 nt | APPRIS P1 TSL 1 (best) BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | PI15-201 | ENST00000260113 | 6732 nt | APPRIS P1 TSL 1 (best) BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | RNU6-223P-201 | ENST00000362830 | 107 nt | BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | Y_RNA.110-201 | ENST00000363220 | 99 nt | BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | RNU6-97P-201 | ENST00000363387 | 104 nt | BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | TSACC-205 | ENST00000368255 | 751 nt | APPRIS P1 TSL 1 (best) BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | RNU6-220P-201 | ENST00000390919 | 107 nt | BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | RNU4-62P-201 | ENST00000410125 | 130 nt | BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | RNU2-72P-201 | ENST00000411175 | 163 nt | BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | AL158013.1-202 | ENST00000419666 | 520 nt | TSL 5 BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | AL161935.1-201 | ENST00000420945 | 421 nt | TSL 3 BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | AC013262.1-201 | ENST00000426710 | 252 nt | BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | LINC00392-201 | ENST00000430033 | 557 nt | TSL 3 BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | MICF-203 | ENST00000432679 | 129 nt | BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | RPL18AP17-201 | ENST00000455326 | 198 nt | BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | AL139109.1-201 | ENST00000455491 | 297 nt | BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | AC005840.1-201 | ENST00000498412 | 377 nt | BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | GTF2IP9-201 | ENST00000502460 | 301 nt | BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | AC105252.1-201 | ENST00000503089 | 286 nt | BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | AC008427.1-201 | ENST00000503102 | 655 nt | BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | AC108078.2-201 | ENST00000510750 | 236 nt | BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | TRMT112P2-201 | ENST00000512910 | 132 nt | BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | AC097460.1-201 | ENST00000514624 | 590 nt | TSL 3 BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | AC015771.1-201 | ENST00000527283 | 554 nt | TSL 4 BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | AP003168.1-201 | ENST00000530091 | 307 nt | BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | TCF4-AS2-201 | ENST00000586467 | 445 nt | TSL 2 BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | LINC02112-205 | ENST00000606744 | 236 nt | TSL 1 (best) BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | AC024257.5-201 | ENST00000612739 | 531 nt | BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | AL445584.2-201 | ENST00000614030 | 616 nt | TSL 5 BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | MIR8070-201 | ENST00000616510 | 88 nt | BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | AC091953.2-201 | ENST00000623979 | 160 nt | BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | AL512643.1-201 | ENST00000635735 | 524 nt | BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | MIR7157-201 | ENST00000635801 | 60 nt | BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | DYNC2H1-203 | ENST00000398093 | 12945 nt | APPRIS P3 TSL 5 BASIC | 1.78 | □□□□□ -2.12 | | |
| HES3 | Q5TGS1 | CCDC82-202 | ENST00000423339 | 1878 nt | APPRIS P2 TSL 1 (best) BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | TEX15-203 | ENST00000638951 | 11341 nt | APPRIS P1 TSL 5 BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | C8orf59-201 | ENST00000321777 | 325 nt | TSL 1 (best) BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | SNORA23-201 | ENST00000365128 | 182 nt | BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | AL390198.1-201 | ENST00000376445 | 320 nt | TSL 2 BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | RNU6-754P-201 | ENST00000391166 | 107 nt | BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | AL590084.2-201 | ENST00000401481 | 382 nt | BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | RNU6ATAC16P-201 | ENST00000408591 | 138 nt | BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | RNU6-920P-201 | ENST00000410926 | 92 nt | BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | USP9YP19-201 | ENST00000412165 | 485 nt | BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | AL161449.1-201 | ENST00000414531 | 1199 nt | BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | USP9YP13-201 | ENST00000417797 | 480 nt | BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | AL451054.2-201 | ENST00000420896 | 202 nt | BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | LINC00387-201 | ENST00000422609 | 458 nt | TSL 5 BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | C1DP1-201 | ENST00000426049 | 402 nt | BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | HMGB1P27-201 | ENST00000431429 | 603 nt | BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | RPL35AP22-201 | ENST00000436855 | 335 nt | BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | MACC1-AS1-201 | ENST00000439285 | 639 nt | TSL 3 BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | LINC01510-201 | ENST00000441991 | 468 nt | TSL 3 BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | AL050303.1-201 | ENST00000444356 | 458 nt | TSL 2 BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | AC002381.1-201 | ENST00000447049 | 280 nt | BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | LINC01546-201 | ENST00000457435 | 674 nt | TSL 2 BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | RNU7-136P-201 | ENST00000458819 | 69 nt | BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | AC097493.1-201 | ENST00000463958 | 372 nt | BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | AC104563.1-201 | ENST00000476147 | 376 nt | BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | AC074033.2-201 | ENST00000480669 | 535 nt | TSL 3 BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | AC104435.1-201 | ENST00000483483 | 166 nt | BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | AC021382.1-201 | ENST00000483523 | 359 nt | BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | AC025475.1-201 | ENST00000512939 | 487 nt | TSL 3 BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | RNU6-250P-201 | ENST00000516958 | 103 nt | BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | AL118556.1-201 | ENST00000555257 | 502 nt | TSL 2 BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | LINC00871-202 | ENST00000556071 | 554 nt | TSL 3 BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | AL359212.1-201 | ENST00000556608 | 614 nt | BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | AC012170.3-201 | ENST00000560159 | 297 nt | TSL 2 BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | AC007598.1-202 | ENST00000561528 | 435 nt | TSL 3 BASIC | 1.77 | □□□□□ -2.13 | | |
| HES3 | Q5TGS1 | LINC02165-201 | ENST00000563061 | 443 nt | TSL 3 BASIC | 1.77 | □□□□□ -2.13 | | |