Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC083923.1-201ENST00000523708 376 ntBASIC0.77□□□□□ -2.29
CHD9Q3L8U1 AC023824.2-201ENST00000566185 400 ntBASIC0.77□□□□□ -2.29
CHD9Q3L8U1 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC0.77□□□□□ -2.29
CHD9Q3L8U1 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC0.77□□□□□ -2.29
CHD9Q3L8U1 AC103810.9-201ENST00000606688 112 ntBASIC0.77□□□□□ -2.29
CHD9Q3L8U1 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC0.77□□□□□ -2.29
CHD9Q3L8U1 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC0.77□□□□□ -2.29
CHD9Q3L8U1 AC006963.1-201ENST00000624003 1052 ntBASIC0.77□□□□□ -2.29
CHD9Q3L8U1 OR4G3P-201ENST00000633500 913 ntBASIC0.77□□□□□ -2.29
CHD9Q3L8U1 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC0.77□□□□□ -2.29
CHD9Q3L8U1 RNU6-167P-201ENST00000384292 106 ntBASIC0.77□□□□□ -2.29
CHD9Q3L8U1 MIR767-201ENST00000390228 109 ntBASIC0.77□□□□□ -2.29
CHD9Q3L8U1 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC0.77□□□□□ -2.29
CHD9Q3L8U1 AL356379.1-201ENST00000414105 126 ntBASIC0.77□□□□□ -2.29
CHD9Q3L8U1 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC0.77□□□□□ -2.29
CHD9Q3L8U1 RBM43P1-201ENST00000476891 1081 ntBASIC0.77□□□□□ -2.29
CHD9Q3L8U1 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC0.77□□□□□ -2.29
CHD9Q3L8U1 MGST1-215ENST00000540056 546 ntTSL 3 BASIC0.77□□□□□ -2.29
CHD9Q3L8U1 AC090616.3-201ENST00000582184 217 ntBASIC0.77□□□□□ -2.29
CHD9Q3L8U1 AC005021.1-201ENST00000608730 355 ntBASIC0.77□□□□□ -2.29
CHD9Q3L8U1 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
CHD9Q3L8U1 ZBTB8OSP1-201ENST00000342688 498 ntBASIC0.76□□□□□ -2.29
CHD9Q3L8U1 RNU1-105P-201ENST00000363470 161 ntBASIC0.76□□□□□ -2.29
CHD9Q3L8U1 Y_RNA.280-201ENST00000364765 112 ntBASIC0.76□□□□□ -2.29
CHD9Q3L8U1 Y_RNA.518-201ENST00000384552 113 ntBASIC0.76□□□□□ -2.29
CHD9Q3L8U1 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC0.76□□□□□ -2.29
CHD9Q3L8U1 RPS20P15-201ENST00000412792 311 ntBASIC0.76□□□□□ -2.29
CHD9Q3L8U1 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC0.76□□□□□ -2.29
CHD9Q3L8U1 MTCYBP34-201ENST00000439552 670 ntBASIC0.76□□□□□ -2.29
CHD9Q3L8U1 UBBP3-201ENST00000445497 241 ntBASIC0.76□□□□□ -2.29
CHD9Q3L8U1 AL589880.1-201ENST00000448271 287 ntBASIC0.76□□□□□ -2.29
CHD9Q3L8U1 AC104629.2-201ENST00000468627 598 ntBASIC0.76□□□□□ -2.29
CHD9Q3L8U1 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC0.76□□□□□ -2.29
CHD9Q3L8U1 RNU1-104P-201ENST00000517280 175 ntBASIC0.76□□□□□ -2.29
CHD9Q3L8U1 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC0.76□□□□□ -2.29
CHD9Q3L8U1 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC0.76□□□□□ -2.29
CHD9Q3L8U1 APOOP3-201ENST00000536787 586 ntBASIC0.76□□□□□ -2.29
CHD9Q3L8U1 AC023050.2-201ENST00000544968 387 ntBASIC0.76□□□□□ -2.29
CHD9Q3L8U1 AC074051.3-201ENST00000570238 358 ntBASIC0.76□□□□□ -2.29
CHD9Q3L8U1 MIR4529-201ENST00000578110 78 ntBASIC0.76□□□□□ -2.29
CHD9Q3L8U1 AC090666.1-201ENST00000578241 445 ntBASIC0.76□□□□□ -2.29
CHD9Q3L8U1 AC010615.3-201ENST00000597319 394 ntBASIC0.76□□□□□ -2.29
CHD9Q3L8U1 AC006249.1-201ENST00000621223 471 ntBASIC0.76□□□□□ -2.29
CHD9Q3L8U1 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC0.76□□□□□ -2.29
CHD9Q3L8U1 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC0.76□□□□□ -2.29
CHD9Q3L8U1 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC0.76□□□□□ -2.29
CHD9Q3L8U1 RNU7-23P-201ENST00000459465 62 ntBASIC0.76□□□□□ -2.29
CHD9Q3L8U1 RNF138P1-201ENST00000502765 546 ntBASIC0.76□□□□□ -2.29
CHD9Q3L8U1 AC112518.2-201ENST00000508565 425 ntBASIC0.76□□□□□ -2.29
CHD9Q3L8U1 SNORA31.18-201ENST00000517043 134 ntBASIC0.76□□□□□ -2.29
CHD9Q3L8U1 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC0.76□□□□□ -2.29
CHD9Q3L8U1 ZNF92P3-201ENST00000596594 954 ntBASIC0.76□□□□□ -2.29
CHD9Q3L8U1 AC005034.5-201ENST00000604219 466 ntBASIC0.76□□□□□ -2.29
CHD9Q3L8U1 AL590410.1-201ENST00000617925 333 ntBASIC0.76□□□□□ -2.29
CHD9Q3L8U1 AC091812.1-201ENST00000432235 1948 ntBASIC0.76□□□□□ -2.29
CHD9Q3L8U1 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
CHD9Q3L8U1 MTND5P11-201ENST00000511037 1812 ntBASIC0.76□□□□□ -2.29
CHD9Q3L8U1 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.76□□□□□ -2.29
CHD9Q3L8U1 RNU6-173P-201ENST00000364215 104 ntBASIC0.75□□□□□ -2.29
CHD9Q3L8U1 RNU6-1074P-201ENST00000383995 104 ntBASIC0.75□□□□□ -2.29
CHD9Q3L8U1 AL138880.1-201ENST00000405824 642 ntBASIC0.75□□□□□ -2.29
CHD9Q3L8U1 RNU6-193P-201ENST00000410977 107 ntBASIC0.75□□□□□ -2.29
CHD9Q3L8U1 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC0.75□□□□□ -2.29
CHD9Q3L8U1 NDUFA5P10-201ENST00000432147 357 ntBASIC0.75□□□□□ -2.29
CHD9Q3L8U1 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC0.75□□□□□ -2.29
CHD9Q3L8U1 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC0.75□□□□□ -2.29
CHD9Q3L8U1 HMGB1P22-201ENST00000505315 124 ntBASIC0.75□□□□□ -2.29
CHD9Q3L8U1 AC087465.1-201ENST00000560574 245 ntBASIC0.75□□□□□ -2.29
CHD9Q3L8U1 AL360181.4-201ENST00000621752 134 ntBASIC0.75□□□□□ -2.29
CHD9Q3L8U1 U3.29-201ENST00000391296 212 ntBASIC0.75□□□□□ -2.29
CHD9Q3L8U1 PRRC2CP1-201ENST00000404428 159 ntBASIC0.75□□□□□ -2.29
CHD9Q3L8U1 RPS6P14-201ENST00000425165 719 ntBASIC0.75□□□□□ -2.29
CHD9Q3L8U1 AL353689.1-201ENST00000438895 199 ntBASIC0.75□□□□□ -2.29
CHD9Q3L8U1 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC0.75□□□□□ -2.29
CHD9Q3L8U1 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC0.75□□□□□ -2.29
CHD9Q3L8U1 AC097493.1-201ENST00000463958 372 ntBASIC0.75□□□□□ -2.29
CHD9Q3L8U1 PCNAP1-201ENST00000505363 709 ntBASIC0.75□□□□□ -2.29
CHD9Q3L8U1 AC113398.2-201ENST00000507630 558 ntBASIC0.75□□□□□ -2.29
CHD9Q3L8U1 AC096745.1-201ENST00000509945 370 ntBASIC0.75□□□□□ -2.29
CHD9Q3L8U1 RNU5F-8P-201ENST00000515941 111 ntBASIC0.75□□□□□ -2.29
CHD9Q3L8U1 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC0.75□□□□□ -2.29
CHD9Q3L8U1 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC0.75□□□□□ -2.29
CHD9Q3L8U1 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC0.75□□□□□ -2.29
CHD9Q3L8U1 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC0.75□□□□□ -2.29
CHD9Q3L8U1 AC092474.3-201ENST00000603022 568 ntBASIC0.75□□□□□ -2.29
CHD9Q3L8U1 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC0.75□□□□□ -2.29
CHD9Q3L8U1 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC0.75□□□□□ -2.29
CHD9Q3L8U1 SUCLA2P2-201ENST00000417269 1309 ntBASIC0.75□□□□□ -2.29
CHD9Q3L8U1 RNU1-72P-201ENST00000362976 153 ntBASIC0.75□□□□□ -2.29
CHD9Q3L8U1 RNU6-942P-201ENST00000363002 107 ntBASIC0.75□□□□□ -2.29
CHD9Q3L8U1 SNORA67.1-201ENST00000364749 141 ntBASIC0.75□□□□□ -2.29
CHD9Q3L8U1 MRPS36P1-201ENST00000421291 307 ntBASIC0.75□□□□□ -2.29
CHD9Q3L8U1 IPO7P1-201ENST00000442031 636 ntBASIC0.75□□□□□ -2.29
CHD9Q3L8U1 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC0.75□□□□□ -2.29
CHD9Q3L8U1 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC0.75□□□□□ -2.29
CHD9Q3L8U1 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
CHD9Q3L8U1 RNU6-496P-201ENST00000516145 99 ntBASIC0.75□□□□□ -2.29
CHD9Q3L8U1 SNORA48.10-201ENST00000516965 160 ntBASIC0.75□□□□□ -2.29
CHD9Q3L8U1 OR5AL2P-201ENST00000532185 920 ntBASIC0.75□□□□□ -2.29
CHD9Q3L8U1 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC0.75□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms