Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 U3.53-201ENST00000628922 216 ntBASIC4.67□□□□□ -1.66
LIG3P49916 AL606534.2-204ENST00000635008 178 ntBASIC4.67□□□□□ -1.66
LIG3P49916 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
LIG3P49916 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
LIG3P49916 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
LIG3P49916 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.67□□□□□ -1.66
LIG3P49916 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
LIG3P49916 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
LIG3P49916 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
LIG3P49916 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
LIG3P49916 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
LIG3P49916 ZNF137P-201ENST00000456718 1920 ntBASIC4.66□□□□□ -1.66
LIG3P49916 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
LIG3P49916 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.66□□□□□ -1.66
LIG3P49916 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
LIG3P49916 Y_RNA.574-201ENST00000384766 95 ntBASIC4.66□□□□□ -1.66
LIG3P49916 RNA5SP397-201ENST00000391323 118 ntBASIC4.66□□□□□ -1.66
LIG3P49916 Z98745.1-201ENST00000402553 494 ntBASIC4.66□□□□□ -1.66
LIG3P49916 RAC1P3-201ENST00000416129 580 ntBASIC4.66□□□□□ -1.66
LIG3P49916 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC4.66□□□□□ -1.66
LIG3P49916 CYP4F29P-201ENST00000420685 446 ntBASIC4.66□□□□□ -1.66
LIG3P49916 BX276092.3-201ENST00000424182 230 ntBASIC4.66□□□□□ -1.66
LIG3P49916 RPL27AP8-201ENST00000424277 446 ntBASIC4.66□□□□□ -1.66
LIG3P49916 AL158071.1-201ENST00000430315 461 ntBASIC4.66□□□□□ -1.66
LIG3P49916 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.66□□□□□ -1.66
LIG3P49916 AC108059.2-201ENST00000434626 151 ntBASIC4.66□□□□□ -1.66
LIG3P49916 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.66□□□□□ -1.66
LIG3P49916 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC4.66□□□□□ -1.66
LIG3P49916 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.66□□□□□ -1.66
LIG3P49916 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC4.66□□□□□ -1.66
LIG3P49916 RPS26P15-201ENST00000488067 348 ntBASIC4.66□□□□□ -1.66
LIG3P49916 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC4.66□□□□□ -1.66
LIG3P49916 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC4.66□□□□□ -1.66
LIG3P49916 RNU4-77P-201ENST00000516692 156 ntBASIC4.66□□□□□ -1.66
LIG3P49916 RNA5SP290-201ENST00000517133 127 ntBASIC4.66□□□□□ -1.66
LIG3P49916 TRAV32-201ENST00000553993 340 ntBASIC4.66□□□□□ -1.66
LIG3P49916 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC4.66□□□□□ -1.66
LIG3P49916 MIR4273-201ENST00000582824 84 ntBASIC4.66□□□□□ -1.66
LIG3P49916 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC4.66□□□□□ -1.66
LIG3P49916 AP000787.2-201ENST00000604432 568 ntBASIC4.66□□□□□ -1.66
LIG3P49916 AC007792.1-201ENST00000623023 402 ntBASIC4.66□□□□□ -1.66
LIG3P49916 ZNF962P-201ENST00000443465 3140 ntBASIC4.66□□□□□ -1.66
LIG3P49916 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
LIG3P49916 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.66□□□□□ -1.66
LIG3P49916 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC4.66□□□□□ -1.66
LIG3P49916 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
LIG3P49916 ANKRD26P2-201ENST00000445530 1710 ntBASIC4.66□□□□□ -1.66
LIG3P49916 AC116096.1-201ENST00000566804 2314 ntBASIC4.66□□□□□ -1.66
LIG3P49916 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.65□□□□□ -1.66
LIG3P49916 AC018555.1-201ENST00000567548 1980 ntBASIC4.65□□□□□ -1.66
LIG3P49916 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
LIG3P49916 NCAPGP1-201ENST00000505112 1814 ntBASIC4.65□□□□□ -1.66
LIG3P49916 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.66
LIG3P49916 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
LIG3P49916 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
LIG3P49916 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
LIG3P49916 SNORA71.2-201ENST00000364941 134 ntBASIC4.65□□□□□ -1.67
LIG3P49916 Y_RNA.314-201ENST00000365114 102 ntBASIC4.65□□□□□ -1.67
LIG3P49916 Y_RNA.424-201ENST00000384063 103 ntBASIC4.65□□□□□ -1.67
LIG3P49916 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
LIG3P49916 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC4.65□□□□□ -1.67
LIG3P49916 AL096701.2-201ENST00000416920 238 ntBASIC4.65□□□□□ -1.67
LIG3P49916 AL590383.1-201ENST00000428602 75 ntBASIC4.65□□□□□ -1.67
LIG3P49916 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC4.65□□□□□ -1.67
LIG3P49916 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.65□□□□□ -1.67
LIG3P49916 MRPS35P2-201ENST00000508242 191 ntBASIC4.65□□□□□ -1.67
LIG3P49916 RNA5SP291-201ENST00000517222 105 ntBASIC4.65□□□□□ -1.67
LIG3P49916 HSBP1P1-201ENST00000555205 166 ntBASIC4.65□□□□□ -1.67
LIG3P49916 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC4.65□□□□□ -1.67
LIG3P49916 AC018889.1-201ENST00000605372 397 ntBASIC4.65□□□□□ -1.67
LIG3P49916 AL121917.1-203ENST00000605534 577 ntBASIC4.65□□□□□ -1.67
LIG3P49916 AL138825.1-201ENST00000618587 192 ntBASIC4.65□□□□□ -1.67
LIG3P49916 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC4.65□□□□□ -1.67
LIG3P49916 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
LIG3P49916 AC091812.1-201ENST00000432235 1948 ntBASIC4.65□□□□□ -1.67
LIG3P49916 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.65□□□□□ -1.67
LIG3P49916 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.67
LIG3P49916 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
LIG3P49916 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
LIG3P49916 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
LIG3P49916 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
LIG3P49916 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
LIG3P49916 RNA5SP22-201ENST00000365393 109 ntBASIC4.64□□□□□ -1.67
LIG3P49916 RNA5SP151-201ENST00000365632 117 ntBASIC4.64□□□□□ -1.67
LIG3P49916 RNU6-741P-201ENST00000383889 107 ntBASIC4.64□□□□□ -1.67
LIG3P49916 Y_RNA.577-201ENST00000384794 101 ntBASIC4.64□□□□□ -1.67
LIG3P49916 AL513475.1-201ENST00000406602 315 ntBASIC4.64□□□□□ -1.67
LIG3P49916 FAR2P2-201ENST00000413041 594 ntBASIC4.64□□□□□ -1.67
LIG3P49916 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
LIG3P49916 AC114482.1-201ENST00000418010 247 ntBASIC4.64□□□□□ -1.67
LIG3P49916 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.64□□□□□ -1.67
LIG3P49916 TOMM20P4-201ENST00000427861 435 ntBASIC4.64□□□□□ -1.67
LIG3P49916 AC006946.1-201ENST00000429106 328 ntBASIC4.64□□□□□ -1.67
LIG3P49916 AC007919.1-201ENST00000429380 217 ntBASIC4.64□□□□□ -1.67
LIG3P49916 AC068287.1-201ENST00000430283 295 ntBASIC4.64□□□□□ -1.67
LIG3P49916 MYL8P-204ENST00000431574 518 ntBASIC4.64□□□□□ -1.67
LIG3P49916 AL353997.1-201ENST00000432936 108 ntBASIC4.64□□□□□ -1.67
LIG3P49916 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC4.64□□□□□ -1.67
LIG3P49916 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.64□□□□□ -1.67
LIG3P49916 NDUFB1P2-201ENST00000449477 176 ntBASIC4.64□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms