Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC023141.4-201ENST00000412031 328 ntBASIC2.71□□□□□ -1.98
CDX1P47902 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC2.71□□□□□ -1.98
CDX1P47902 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC2.71□□□□□ -1.98
CDX1P47902 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC2.71□□□□□ -1.98
CDX1P47902 AL158156.1-201ENST00000422509 473 ntBASIC2.71□□□□□ -1.98
CDX1P47902 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC2.71□□□□□ -1.98
CDX1P47902 AL358075.3-201ENST00000426289 226 ntBASIC2.71□□□□□ -1.98
CDX1P47902 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.71□□□□□ -1.98
CDX1P47902 AC097713.2-201ENST00000430199 356 ntBASIC2.71□□□□□ -1.98
CDX1P47902 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC2.71□□□□□ -1.98
CDX1P47902 AL591704.1-201ENST00000432574 275 ntBASIC2.71□□□□□ -1.98
CDX1P47902 AC005019.1-201ENST00000436455 431 ntBASIC2.71□□□□□ -1.98
CDX1P47902 AL031667.1-201ENST00000440222 725 ntBASIC2.71□□□□□ -1.98
CDX1P47902 AC009296.1-201ENST00000443146 155 ntBASIC2.71□□□□□ -1.98
CDX1P47902 MTATP6P7-201ENST00000453315 681 ntBASIC2.71□□□□□ -1.98
CDX1P47902 AL590639.1-201ENST00000456484 337 ntBASIC2.71□□□□□ -1.98
CDX1P47902 snoU13.22-201ENST00000459428 104 ntBASIC2.71□□□□□ -1.98
CDX1P47902 CENPBD1P1-201ENST00000464061 469 ntBASIC2.71□□□□□ -1.98
CDX1P47902 AC109927.2-201ENST00000506416 303 ntBASIC2.71□□□□□ -1.98
CDX1P47902 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC2.71□□□□□ -1.98
CDX1P47902 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC2.71□□□□□ -1.98
CDX1P47902 RNU6-123P-201ENST00000516163 102 ntBASIC2.71□□□□□ -1.98
CDX1P47902 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC2.71□□□□□ -1.98
CDX1P47902 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC2.71□□□□□ -1.98
CDX1P47902 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
CDX1P47902 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
CDX1P47902 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.71□□□□□ -1.98
CDX1P47902 AC011611.1-201ENST00000552179 197 ntBASIC2.71□□□□□ -1.98
CDX1P47902 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC2.71□□□□□ -1.98
CDX1P47902 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC2.71□□□□□ -1.98
CDX1P47902 SRGNP1-201ENST00000603392 451 ntBASIC2.71□□□□□ -1.98
CDX1P47902 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
CDX1P47902 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC2.71□□□□□ -1.98
CDX1P47902 ELF2P3-201ENST00000445099 1506 ntBASIC2.71□□□□□ -1.98
CDX1P47902 AC092447.7-201ENST00000422212 1621 ntBASIC2.71□□□□□ -1.98
CDX1P47902 ADAM3A-203ENST00000461344 2157 ntBASIC2.7□□□□□ -1.98
CDX1P47902 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC2.7□□□□□ -1.98
CDX1P47902 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
CDX1P47902 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
CDX1P47902 RNU6-456P-201ENST00000384493 107 ntBASIC2.7□□□□□ -1.98
CDX1P47902 RNA5SP111-201ENST00000411386 101 ntBASIC2.7□□□□□ -1.98
CDX1P47902 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC2.7□□□□□ -1.98
CDX1P47902 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC2.7□□□□□ -1.98
CDX1P47902 USP9YP6-201ENST00000413550 854 ntBASIC2.7□□□□□ -1.98
CDX1P47902 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC2.7□□□□□ -1.98
CDX1P47902 DBIP2-201ENST00000419076 262 ntBASIC2.7□□□□□ -1.98
CDX1P47902 AC133104.1-201ENST00000429100 218 ntBASIC2.7□□□□□ -1.98
CDX1P47902 SAR1AP4-201ENST00000429225 591 ntBASIC2.7□□□□□ -1.98
CDX1P47902 MTATP6P16-201ENST00000434543 526 ntBASIC2.7□□□□□ -1.98
CDX1P47902 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC2.7□□□□□ -1.98
CDX1P47902 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.7□□□□□ -1.98
CDX1P47902 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC2.7□□□□□ -1.98
CDX1P47902 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC2.7□□□□□ -1.98
CDX1P47902 RPL21P10-201ENST00000463521 490 ntBASIC2.7□□□□□ -1.98
CDX1P47902 RPL31P41-201ENST00000477967 372 ntBASIC2.7□□□□□ -1.98
CDX1P47902 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.7□□□□□ -1.98
CDX1P47902 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.7□□□□□ -1.98
CDX1P47902 FCF1P8-201ENST00000510322 597 ntBASIC2.7□□□□□ -1.98
CDX1P47902 MTCO3P28-201ENST00000513351 515 ntBASIC2.7□□□□□ -1.98
CDX1P47902 SNORA70.19-201ENST00000516717 90 ntBASIC2.7□□□□□ -1.98
CDX1P47902 RNU6-703P-201ENST00000516946 107 ntBASIC2.7□□□□□ -1.98
CDX1P47902 RNU6-1315P-201ENST00000517187 99 ntBASIC2.7□□□□□ -1.98
CDX1P47902 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.7□□□□□ -1.98
CDX1P47902 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC2.7□□□□□ -1.98
CDX1P47902 AC025755.1-201ENST00000521306 278 ntBASIC2.7□□□□□ -1.98
CDX1P47902 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.7□□□□□ -1.98
CDX1P47902 AP003122.3-201ENST00000526316 255 ntBASIC2.7□□□□□ -1.98
CDX1P47902 AC084851.1-201ENST00000529105 249 ntBASIC2.7□□□□□ -1.98
CDX1P47902 AC026333.2-201ENST00000542164 106 ntBASIC2.7□□□□□ -1.98
CDX1P47902 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC2.7□□□□□ -1.98
CDX1P47902 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.7□□□□□ -1.98
CDX1P47902 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC2.7□□□□□ -1.98
CDX1P47902 MIR1273C-201ENST00000578669 77 ntBASIC2.7□□□□□ -1.98
CDX1P47902 AP005136.1-201ENST00000579765 429 ntBASIC2.7□□□□□ -1.98
CDX1P47902 AC020895.1-201ENST00000595362 272 ntBASIC2.7□□□□□ -1.98
CDX1P47902 AC012409.4-201ENST00000612923 249 ntBASIC2.7□□□□□ -1.98
CDX1P47902 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.7□□□□□ -1.98
CDX1P47902 AC025034.2-201ENST00000623264 286 ntBASIC2.7□□□□□ -1.98
CDX1P47902 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC2.7□□□□□ -1.98
CDX1P47902 MTND5P1-201ENST00000445440 1375 ntBASIC2.7□□□□□ -1.98
CDX1P47902 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC2.7□□□□□ -1.98
CDX1P47902 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
CDX1P47902 AC092435.3-201ENST00000565538 3654 ntBASIC2.69□□□□□ -1.98
CDX1P47902 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.69□□□□□ -1.98
CDX1P47902 RNU4-35P-201ENST00000362588 141 ntBASIC2.69□□□□□ -1.98
CDX1P47902 RNU6-1097P-201ENST00000363586 107 ntBASIC2.69□□□□□ -1.98
CDX1P47902 RNU1-33P-201ENST00000364249 162 ntBASIC2.69□□□□□ -1.98
CDX1P47902 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.69□□□□□ -1.98
CDX1P47902 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
CDX1P47902 SNORD17-201ENST00000390930 237 ntBASIC2.69□□□□□ -1.98
CDX1P47902 RNU6-1025P-201ENST00000410629 104 ntBASIC2.69□□□□□ -1.98
CDX1P47902 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
CDX1P47902 RPL7P37-201ENST00000425095 738 ntBASIC2.69□□□□□ -1.98
CDX1P47902 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.69□□□□□ -1.98
CDX1P47902 AL358934.1-201ENST00000432346 324 ntBASIC2.69□□□□□ -1.98
CDX1P47902 AC098831.1-201ENST00000440661 216 ntBASIC2.69□□□□□ -1.98
CDX1P47902 DPPA3P1-201ENST00000448050 469 ntBASIC2.69□□□□□ -1.98
CDX1P47902 MTCYBP1-201ENST00000454315 1119 ntBASIC2.69□□□□□ -1.98
CDX1P47902 AL358832.1-201ENST00000497800 389 ntBASIC2.69□□□□□ -1.98
CDX1P47902 AC009901.1-201ENST00000506703 541 ntBASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms