Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RNU6-178P-201ENST00000384631 104 ntBASIC4.84□□□□□ -1.63
MSX1P28360 MIR105-1-201ENST00000385222 81 ntBASIC4.84□□□□□ -1.63
MSX1P28360 MIR153-2-201ENST00000385225 87 ntBASIC4.84□□□□□ -1.63
MSX1P28360 RNA5SP241-201ENST00000391326 114 ntBASIC4.84□□□□□ -1.63
MSX1P28360 RPL23AP26-201ENST00000412728 464 ntBASIC4.84□□□□□ -1.63
MSX1P28360 RPL19P16-201ENST00000433839 588 ntBASIC4.84□□□□□ -1.63
MSX1P28360 PSMD10P3-201ENST00000437000 448 ntBASIC4.84□□□□□ -1.63
MSX1P28360 AC124916.1-201ENST00000444020 547 ntBASIC4.84□□□□□ -1.63
MSX1P28360 AC073850.1-201ENST00000449243 255 ntBASIC4.84□□□□□ -1.63
MSX1P28360 RPS5P7-201ENST00000456664 608 ntBASIC4.84□□□□□ -1.63
MSX1P28360 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.84□□□□□ -1.63
MSX1P28360 RPS20P22-201ENST00000473700 357 ntBASIC4.84□□□□□ -1.63
MSX1P28360 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC4.84□□□□□ -1.63
MSX1P28360 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC4.84□□□□□ -1.63
MSX1P28360 AC098976.1-201ENST00000513014 541 ntBASIC4.84□□□□□ -1.63
MSX1P28360 RN7SKP49-201ENST00000516675 260 ntBASIC4.84□□□□□ -1.63
MSX1P28360 MIR4436B2-201ENST00000581415 91 ntBASIC4.84□□□□□ -1.63
MSX1P28360 AC233702.9-201ENST00000581528 203 ntBASIC4.84□□□□□ -1.63
MSX1P28360 MIR4436B1-201ENST00000583272 91 ntBASIC4.84□□□□□ -1.63
MSX1P28360 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC4.84□□□□□ -1.63
MSX1P28360 AC084757.4-201ENST00000616350 526 ntBASIC4.84□□□□□ -1.63
MSX1P28360 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.84□□□□□ -1.63
MSX1P28360 AP002799.1-201ENST00000623552 423 ntBASIC4.84□□□□□ -1.63
MSX1P28360 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC4.84□□□□□ -1.63
MSX1P28360 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
MSX1P28360 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
MSX1P28360 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
MSX1P28360 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
MSX1P28360 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
MSX1P28360 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
MSX1P28360 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.64
MSX1P28360 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC4.84□□□□□ -1.64
MSX1P28360 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.64
MSX1P28360 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.64
MSX1P28360 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
MSX1P28360 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC4.83□□□□□ -1.64
MSX1P28360 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
MSX1P28360 RNU6-78P-201ENST00000362897 107 ntBASIC4.83□□□□□ -1.64
MSX1P28360 OR1L6-202ENST00000373684 1044 ntBASIC4.83□□□□□ -1.64
MSX1P28360 MIR153-1-201ENST00000384914 90 ntBASIC4.83□□□□□ -1.64
MSX1P28360 Y_RNA.597-201ENST00000410463 100 ntBASIC4.83□□□□□ -1.64
MSX1P28360 RAB9AP3-201ENST00000412737 573 ntBASIC4.83□□□□□ -1.64
MSX1P28360 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC4.83□□□□□ -1.64
MSX1P28360 AC007560.1-201ENST00000426912 237 ntBASIC4.83□□□□□ -1.64
MSX1P28360 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC4.83□□□□□ -1.64
MSX1P28360 AC096638.1-201ENST00000444678 216 ntBASIC4.83□□□□□ -1.64
MSX1P28360 RAB9AP1-201ENST00000449393 573 ntBASIC4.83□□□□□ -1.64
MSX1P28360 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC4.83□□□□□ -1.64
MSX1P28360 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.83□□□□□ -1.64
MSX1P28360 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC4.83□□□□□ -1.64
MSX1P28360 RPL10P14-201ENST00000565265 298 ntBASIC4.83□□□□□ -1.64
MSX1P28360 AC006116.3-201ENST00000592968 361 ntBASIC4.83□□□□□ -1.64
MSX1P28360 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC4.83□□□□□ -1.64
MSX1P28360 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.83□□□□□ -1.64
MSX1P28360 AC069307.1-201ENST00000602820 447 ntBASIC4.83□□□□□ -1.64
MSX1P28360 AL162431.4-201ENST00000604674 411 ntBASIC4.83□□□□□ -1.64
MSX1P28360 AC131238.1-201ENST00000617135 328 ntBASIC4.83□□□□□ -1.64
MSX1P28360 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC4.83□□□□□ -1.64
MSX1P28360 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC4.83□□□□□ -1.64
MSX1P28360 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC4.83□□□□□ -1.64
MSX1P28360 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
MSX1P28360 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC4.83□□□□□ -1.64
MSX1P28360 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
MSX1P28360 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
MSX1P28360 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
MSX1P28360 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
MSX1P28360 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
MSX1P28360 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC4.82□□□□□ -1.64
MSX1P28360 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
MSX1P28360 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
MSX1P28360 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
MSX1P28360 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
MSX1P28360 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
MSX1P28360 Y_RNA.230-201ENST00000364348 109 ntBASIC4.82□□□□□ -1.64
MSX1P28360 RNU6-20P-201ENST00000384106 107 ntBASIC4.82□□□□□ -1.64
MSX1P28360 Y_RNA.586-201ENST00000391146 98 ntBASIC4.82□□□□□ -1.64
MSX1P28360 Z85995.1-201ENST00000415547 335 ntBASIC4.82□□□□□ -1.64
MSX1P28360 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC4.82□□□□□ -1.64
MSX1P28360 POLR2KP2-201ENST00000438155 177 ntBASIC4.82□□□□□ -1.64
MSX1P28360 CYCSP32-201ENST00000440548 321 ntBASIC4.82□□□□□ -1.64
MSX1P28360 MRPS10P1-201ENST00000448483 130 ntBASIC4.82□□□□□ -1.64
MSX1P28360 AC092798.1-201ENST00000458542 409 ntBASIC4.82□□□□□ -1.64
MSX1P28360 RNU6-567P-201ENST00000516746 107 ntBASIC4.82□□□□□ -1.64
MSX1P28360 RNA5SP230-201ENST00000517039 122 ntBASIC4.82□□□□□ -1.64
MSX1P28360 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.82□□□□□ -1.64
MSX1P28360 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
MSX1P28360 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC4.82□□□□□ -1.64
MSX1P28360 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC4.82□□□□□ -1.64
MSX1P28360 MIR5692C2-201ENST00000577959 77 ntBASIC4.82□□□□□ -1.64
MSX1P28360 MIR4782-201ENST00000577987 79 ntBASIC4.82□□□□□ -1.64
MSX1P28360 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
MSX1P28360 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.82□□□□□ -1.64
MSX1P28360 AC005828.6-201ENST00000606610 232 ntBASIC4.82□□□□□ -1.64
MSX1P28360 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC4.82□□□□□ -1.64
MSX1P28360 AC100827.5-201ENST00000615883 426 ntBASIC4.82□□□□□ -1.64
MSX1P28360 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC4.82□□□□□ -1.64
MSX1P28360 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC4.82□□□□□ -1.64
MSX1P28360 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
MSX1P28360 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
MSX1P28360 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms