Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC0.38□□□□□ -2.35
APOBP04114 RPL21P32-201ENST00000419877 477 ntBASIC0.38□□□□□ -2.35
APOBP04114 RRN3P3-201ENST00000549207 578 ntBASIC0.38□□□□□ -2.35
APOBP04114 HSBP1P1-201ENST00000555205 166 ntBASIC0.38□□□□□ -2.35
APOBP04114 AL121839.1-201ENST00000556233 1185 ntBASIC0.38□□□□□ -2.35
APOBP04114 LINC00557-201ENST00000563184 1279 ntBASIC0.38□□□□□ -2.35
APOBP04114 MIR3117-201ENST00000584034 78 ntBASIC0.38□□□□□ -2.35
APOBP04114 MIR6866-201ENST00000638146 69 ntBASIC0.38□□□□□ -2.35
APOBP04114 AC132825.8-201ENST00000640783 297 ntBASIC0.38□□□□□ -2.35
APOBP04114 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC0.38□□□□□ -2.35
APOBP04114 OR4G2P-201ENST00000328113 903 ntBASIC0.38□□□□□ -2.35
APOBP04114 MTND5P15-201ENST00000434246 349 ntBASIC0.38□□□□□ -2.35
APOBP04114 AC008834.1-201ENST00000511612 175 ntBASIC0.38□□□□□ -2.35
APOBP04114 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC0.38□□□□□ -2.35
APOBP04114 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.38□□□□□ -2.35
APOBP04114 RNU6-955P-201ENST00000410497 104 ntBASIC0.38□□□□□ -2.35
APOBP04114 AC093155.1-201ENST00000440164 826 ntBASIC0.38□□□□□ -2.35
APOBP04114 OSTCP8-201ENST00000445117 448 ntBASIC0.38□□□□□ -2.35
APOBP04114 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC0.38□□□□□ -2.35
APOBP04114 PABPC1P3-201ENST00000469174 459 ntBASIC0.38□□□□□ -2.35
APOBP04114 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC0.38□□□□□ -2.35
APOBP04114 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC0.38□□□□□ -2.35
APOBP04114 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC0.38□□□□□ -2.35
APOBP04114 AC079148.1-201ENST00000565944 819 ntBASIC0.38□□□□□ -2.35
APOBP04114 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC0.38□□□□□ -2.35
APOBP04114 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC0.38□□□□□ -2.35
APOBP04114 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC0.38□□□□□ -2.35
APOBP04114 Y_RNA.136-201ENST00000363444 102 ntBASIC0.37□□□□□ -2.35
APOBP04114 MIR1912-201ENST00000410389 80 ntBASIC0.37□□□□□ -2.35
APOBP04114 SEPT2P1-201ENST00000419651 180 ntBASIC0.37□□□□□ -2.35
APOBP04114 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC0.37□□□□□ -2.35
APOBP04114 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC0.37□□□□□ -2.35
APOBP04114 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC0.37□□□□□ -2.35
APOBP04114 MIR4287-201ENST00000579398 78 ntBASIC0.37□□□□□ -2.35
APOBP04114 DUSP12P1-201ENST00000612874 516 ntBASIC0.37□□□□□ -2.35
APOBP04114 CD24P4-201ENST00000382840 243 ntBASIC0.37□□□□□ -2.35
APOBP04114 MIR329-1-201ENST00000385028 80 ntBASIC0.37□□□□□ -2.35
APOBP04114 RNA5SP266-201ENST00000410273 108 ntBASIC0.37□□□□□ -2.35
APOBP04114 HMGB3P31-201ENST00000413333 595 ntBASIC0.37□□□□□ -2.35
APOBP04114 TRBV26OR9-2-201ENST00000432077 293 ntBASIC0.37□□□□□ -2.35
APOBP04114 RPL37P6-202ENST00000464216 403 ntBASIC0.37□□□□□ -2.35
APOBP04114 SYF2P1-201ENST00000550658 413 ntBASIC0.37□□□□□ -2.35
APOBP04114 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC0.37□□□□□ -2.35
APOBP04114 Y_RNA.390-201ENST00000383932 102 ntBASIC0.37□□□□□ -2.35
APOBP04114 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC0.37□□□□□ -2.35
APOBP04114 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC0.37□□□□□ -2.35
APOBP04114 ATP6V0E1P3-201ENST00000420036 246 ntBASIC0.37□□□□□ -2.35
APOBP04114 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC0.37□□□□□ -2.35
APOBP04114 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC0.37□□□□□ -2.35
APOBP04114 AC243960.4-201ENST00000600532 288 ntBASIC0.37□□□□□ -2.35
APOBP04114 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC0.37□□□□□ -2.35
APOBP04114 RNU6-173P-201ENST00000364215 104 ntBASIC0.36□□□□□ -2.35
APOBP04114 MIR329-2-201ENST00000385029 84 ntBASIC0.36□□□□□ -2.35
APOBP04114 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC0.36□□□□□ -2.35
APOBP04114 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC0.36□□□□□ -2.35
APOBP04114 RNU6-1218P-201ENST00000458990 108 ntBASIC0.36□□□□□ -2.35
APOBP04114 AC093770.1-201ENST00000511559 571 ntBASIC0.36□□□□□ -2.35
APOBP04114 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC0.36□□□□□ -2.35
APOBP04114 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC0.36□□□□□ -2.35
APOBP04114 AP003476.1-201ENST00000623984 516 ntBASIC0.36□□□□□ -2.35
APOBP04114 ZNF519P1-201ENST00000449011 1626 ntBASIC0.36□□□□□ -2.35
APOBP04114 RNU6-19P-201ENST00000384718 107 ntBASIC0.36□□□□□ -2.35
APOBP04114 MIR515-2-201ENST00000384883 83 ntBASIC0.36□□□□□ -2.35
APOBP04114 MIR515-1-201ENST00000384884 83 ntBASIC0.36□□□□□ -2.35
APOBP04114 AC092628.1-201ENST00000436250 252 ntBASIC0.36□□□□□ -2.35
APOBP04114 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC0.36□□□□□ -2.35
APOBP04114 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC0.36□□□□□ -2.35
APOBP04114 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC0.36□□□□□ -2.35
APOBP04114 AL627230.6-201ENST00000611129 280 ntBASIC0.36□□□□□ -2.35
APOBP04114 AL773524.1-201ENST00000614065 229 ntBASIC0.36□□□□□ -2.35
APOBP04114 MIR6718-201ENST00000616153 80 ntBASIC0.36□□□□□ -2.35
APOBP04114 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.36□□□□□ -2.35
APOBP04114 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC0.36□□□□□ -2.35
APOBP04114 ZNF29P-201ENST00000225587 168 ntBASIC0.36□□□□□ -2.35
APOBP04114 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC0.36□□□□□ -2.35
APOBP04114 RNU6-418P-201ENST00000384035 107 ntBASIC0.36□□□□□ -2.35
APOBP04114 Y_RNA.488-201ENST00000384403 102 ntBASIC0.36□□□□□ -2.35
APOBP04114 RNA5SP299-201ENST00000391203 116 ntBASIC0.36□□□□□ -2.35
APOBP04114 MIR934-201ENST00000401241 83 ntBASIC0.36□□□□□ -2.35
APOBP04114 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC0.36□□□□□ -2.35
APOBP04114 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC0.36□□□□□ -2.35
APOBP04114 AC118282.2-201ENST00000508739 374 ntBASIC0.36□□□□□ -2.35
APOBP04114 OR5AL2P-201ENST00000532185 920 ntBASIC0.36□□□□□ -2.35
APOBP04114 MGST1-215ENST00000540056 546 ntTSL 3 BASIC0.36□□□□□ -2.35
APOBP04114 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC0.36□□□□□ -2.35
APOBP04114 AL021879.1-201ENST00000611756 288 ntBASIC0.36□□□□□ -2.35
APOBP04114 AC109454.4-201ENST00000623411 649 ntBASIC0.36□□□□□ -2.35
APOBP04114 AL022578.1-201ENST00000439330 1433 ntBASIC0.36□□□□□ -2.35
APOBP04114 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC0.36□□□□□ -2.35
APOBP04114 MTCO1P23-201ENST00000415223 1526 ntBASIC0.36□□□□□ -2.35
APOBP04114 AC087359.1-201ENST00000508335 1740 ntBASIC0.35□□□□□ -2.35
APOBP04114 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC0.35□□□□□ -2.35
APOBP04114 AP006587.4-201ENST00000526053 529 ntBASIC0.35□□□□□ -2.35
APOBP04114 BNIP3P26-201ENST00000600827 554 ntBASIC0.35□□□□□ -2.35
APOBP04114 AC126177.8-201ENST00000618339 1015 ntBASIC0.35□□□□□ -2.35
APOBP04114 RNU1-105P-201ENST00000363470 161 ntBASIC0.35□□□□□ -2.35
APOBP04114 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC0.35□□□□□ -2.35
APOBP04114 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC0.35□□□□□ -2.35
APOBP04114 AC110079.1-202ENST00000635213 138 ntBASIC0.35□□□□□ -2.35
APOBP04114 AL137003.2-201ENST00000606924 2538 ntBASIC0.35□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms