Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC5.22□□□□□ -1.57
CCDC9Q9Y3X0 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC9Q9Y3X0 RNU6-451P-201ENST00000362921 107 ntBASIC5.22□□□□□ -1.57
CCDC9Q9Y3X0 RNA5SP51-201ENST00000364750 119 ntBASIC5.22□□□□□ -1.57
CCDC9Q9Y3X0 RNU6-715P-201ENST00000365204 103 ntBASIC5.22□□□□□ -1.57
CCDC9Q9Y3X0 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
CCDC9Q9Y3X0 RNA5SP252-201ENST00000391131 119 ntBASIC5.22□□□□□ -1.57
CCDC9Q9Y3X0 AL160275.2-201ENST00000412010 394 ntBASIC5.22□□□□□ -1.57
CCDC9Q9Y3X0 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC9Q9Y3X0 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC9Q9Y3X0 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC9Q9Y3X0 RPL26P9-201ENST00000457466 433 ntBASIC5.22□□□□□ -1.57
CCDC9Q9Y3X0 SCARNA18-201ENST00000459004 134 ntBASIC5.22□□□□□ -1.57
CCDC9Q9Y3X0 RPL21P11-201ENST00000461458 483 ntBASIC5.22□□□□□ -1.57
CCDC9Q9Y3X0 AC010469.1-201ENST00000463864 576 ntBASIC5.22□□□□□ -1.57
CCDC9Q9Y3X0 AC104136.1-201ENST00000512969 394 ntBASIC5.22□□□□□ -1.57
CCDC9Q9Y3X0 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC9Q9Y3X0 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC9Q9Y3X0 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC5.22□□□□□ -1.57
CCDC9Q9Y3X0 AC110741.2-201ENST00000605278 268 ntBASIC5.22□□□□□ -1.57
CCDC9Q9Y3X0 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC9Q9Y3X0 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC9Q9Y3X0 U6.42-201ENST00000618440 107 ntBASIC5.22□□□□□ -1.57
CCDC9Q9Y3X0 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC9Q9Y3X0 EOGT-210ENST00000615922 1931 ntBASIC5.22□□□□□ -1.57
CCDC9Q9Y3X0 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC9Q9Y3X0 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
CCDC9Q9Y3X0 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC9Q9Y3X0 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC5.22□□□□□ -1.57
CCDC9Q9Y3X0 SUPT16HP1-201ENST00000537175 3133 ntBASIC5.21□□□□□ -1.57
CCDC9Q9Y3X0 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.58
CCDC9Q9Y3X0 RNU4-66P-201ENST00000365199 138 ntBASIC5.21□□□□□ -1.58
CCDC9Q9Y3X0 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.58
CCDC9Q9Y3X0 RNU6-198P-201ENST00000384258 104 ntBASIC5.21□□□□□ -1.58
CCDC9Q9Y3X0 CD3D-202ENST00000392884 476 ntTSL 2 BASIC5.21□□□□□ -1.58
CCDC9Q9Y3X0 OR9R1P-201ENST00000412200 877 ntBASIC5.21□□□□□ -1.58
CCDC9Q9Y3X0 RPL26P27-201ENST00000414397 437 ntBASIC5.21□□□□□ -1.58
CCDC9Q9Y3X0 RPL21P90-201ENST00000415692 466 ntBASIC5.21□□□□□ -1.58
CCDC9Q9Y3X0 AC073063.1-201ENST00000434352 607 ntBASIC5.21□□□□□ -1.58
CCDC9Q9Y3X0 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC5.21□□□□□ -1.58
CCDC9Q9Y3X0 RPL21P23-201ENST00000446654 460 ntBASIC5.21□□□□□ -1.58
CCDC9Q9Y3X0 IGKV1OR-3-201ENST00000446944 348 ntBASIC5.21□□□□□ -1.58
CCDC9Q9Y3X0 AC092798.1-201ENST00000458542 409 ntBASIC5.21□□□□□ -1.58
CCDC9Q9Y3X0 RPL7P47-201ENST00000497299 556 ntBASIC5.21□□□□□ -1.58
CCDC9Q9Y3X0 RPL38P4-201ENST00000502376 214 ntBASIC5.21□□□□□ -1.58
CCDC9Q9Y3X0 FAM92A1P2-202ENST00000504766 877 ntBASIC5.21□□□□□ -1.58
CCDC9Q9Y3X0 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC9Q9Y3X0 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC9Q9Y3X0 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC5.21□□□□□ -1.58
CCDC9Q9Y3X0 BNIP3P6-201ENST00000549284 499 ntBASIC5.21□□□□□ -1.58
CCDC9Q9Y3X0 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC5.21□□□□□ -1.58
CCDC9Q9Y3X0 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC9Q9Y3X0 AC233309.1-201ENST00000619522 751 ntBASIC5.21□□□□□ -1.58
CCDC9Q9Y3X0 U6.99-201ENST00000637524 83 ntBASIC5.21□□□□□ -1.58
CCDC9Q9Y3X0 AC233263.6-201ENST00000631132 1963 ntBASIC5.21□□□□□ -1.58
CCDC9Q9Y3X0 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC9Q9Y3X0 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC5.21□□□□□ -1.58
CCDC9Q9Y3X0 MTND5P7-201ENST00000413558 1798 ntBASIC5.21□□□□□ -1.58
CCDC9Q9Y3X0 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC9Q9Y3X0 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
CCDC9Q9Y3X0 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC9Q9Y3X0 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC5.2□□□□□ -1.58
CCDC9Q9Y3X0 OR4G1P-203ENST00000641984 1631 ntBASIC5.2□□□□□ -1.58
CCDC9Q9Y3X0 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC5.2□□□□□ -1.58
CCDC9Q9Y3X0 RNU6-393P-201ENST00000384475 107 ntBASIC5.2□□□□□ -1.58
CCDC9Q9Y3X0 RNU6-1127P-201ENST00000384580 107 ntBASIC5.2□□□□□ -1.58
CCDC9Q9Y3X0 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
CCDC9Q9Y3X0 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
CCDC9Q9Y3X0 AL592114.1-201ENST00000403842 483 ntBASIC5.2□□□□□ -1.58
CCDC9Q9Y3X0 RNU6ATAC10P-201ENST00000408635 111 ntBASIC5.2□□□□□ -1.58
CCDC9Q9Y3X0 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC9Q9Y3X0 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC5.2□□□□□ -1.58
CCDC9Q9Y3X0 IL7-206ENST00000520269 456 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC9Q9Y3X0 AC025755.1-201ENST00000521306 278 ntBASIC5.2□□□□□ -1.58
CCDC9Q9Y3X0 AC007458.1-201ENST00000542812 373 ntBASIC5.2□□□□□ -1.58
CCDC9Q9Y3X0 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC5.2□□□□□ -1.58
CCDC9Q9Y3X0 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC9Q9Y3X0 AC002553.4-201ENST00000616896 331 ntBASIC5.2□□□□□ -1.58
CCDC9Q9Y3X0 MIR3662-201ENST00000637030 95 ntBASIC5.2□□□□□ -1.58
CCDC9Q9Y3X0 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC9Q9Y3X0 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC9Q9Y3X0 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC9Q9Y3X0 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC9Q9Y3X0 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC9Q9Y3X0 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC5.19□□□□□ -1.58
CCDC9Q9Y3X0 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC9Q9Y3X0 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC9Q9Y3X0 RNU6-434P-201ENST00000384376 107 ntBASIC5.19□□□□□ -1.58
CCDC9Q9Y3X0 RNU6-1179P-201ENST00000384667 107 ntBASIC5.19□□□□□ -1.58
CCDC9Q9Y3X0 MIR578-201ENST00000384828 96 ntBASIC5.19□□□□□ -1.58
CCDC9Q9Y3X0 SNORD70.1-201ENST00000391007 85 ntBASIC5.19□□□□□ -1.58
CCDC9Q9Y3X0 MTHFD2P2-201ENST00000407725 247 ntBASIC5.19□□□□□ -1.58
CCDC9Q9Y3X0 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC9Q9Y3X0 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC9Q9Y3X0 AC007560.1-201ENST00000426912 237 ntBASIC5.19□□□□□ -1.58
CCDC9Q9Y3X0 NFU1P2-201ENST00000448700 469 ntBASIC5.19□□□□□ -1.58
CCDC9Q9Y3X0 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms