Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS4AQ9UN37 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
VPS4AQ9UN37 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
VPS4AQ9UN37 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
VPS4AQ9UN37 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC3.6□□□□□ -1.83
VPS4AQ9UN37 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
VPS4AQ9UN37 RNU4-20P-201ENST00000365601 151 ntBASIC3.6□□□□□ -1.83
VPS4AQ9UN37 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
VPS4AQ9UN37 RNU6-38P-201ENST00000384085 107 ntBASIC3.6□□□□□ -1.83
VPS4AQ9UN37 MIR218-2-201ENST00000385006 110 ntBASIC3.6□□□□□ -1.83
VPS4AQ9UN37 AL139397.2-201ENST00000404529 772 ntBASIC3.6□□□□□ -1.83
VPS4AQ9UN37 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.6□□□□□ -1.83
VPS4AQ9UN37 RNU2-41P-201ENST00000410991 178 ntBASIC3.6□□□□□ -1.83
VPS4AQ9UN37 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC3.6□□□□□ -1.83
VPS4AQ9UN37 RPL21P109-201ENST00000422213 475 ntBASIC3.6□□□□□ -1.83
VPS4AQ9UN37 AC012498.1-201ENST00000424037 437 ntBASIC3.6□□□□□ -1.83
VPS4AQ9UN37 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC3.6□□□□□ -1.83
VPS4AQ9UN37 MTND3P16-201ENST00000452205 344 ntBASIC3.6□□□□□ -1.83
VPS4AQ9UN37 AL162395.1-201ENST00000457882 422 ntBASIC3.6□□□□□ -1.83
VPS4AQ9UN37 RNU6-333P-201ENST00000459117 107 ntBASIC3.6□□□□□ -1.83
VPS4AQ9UN37 AC091951.2-201ENST00000500762 203 ntBASIC3.6□□□□□ -1.83
VPS4AQ9UN37 AC091885.1-201ENST00000506658 268 ntBASIC3.6□□□□□ -1.83
VPS4AQ9UN37 AC098799.2-201ENST00000509466 868 ntBASIC3.6□□□□□ -1.83
VPS4AQ9UN37 AC108078.2-201ENST00000510750 236 ntBASIC3.6□□□□□ -1.83
VPS4AQ9UN37 AC114781.4-201ENST00000513707 639 ntBASIC3.6□□□□□ -1.83
VPS4AQ9UN37 SNORA31.8-201ENST00000516327 108 ntBASIC3.6□□□□□ -1.83
VPS4AQ9UN37 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.6□□□□□ -1.83
VPS4AQ9UN37 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.6□□□□□ -1.83
VPS4AQ9UN37 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.6□□□□□ -1.83
VPS4AQ9UN37 AC005730.3-201ENST00000583067 366 ntBASIC3.6□□□□□ -1.83
VPS4AQ9UN37 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.6□□□□□ -1.83
VPS4AQ9UN37 AC006023.2-201ENST00000609916 167 ntBASIC3.6□□□□□ -1.83
VPS4AQ9UN37 AC104260.1-201ENST00000616660 539 ntBASIC3.6□□□□□ -1.83
VPS4AQ9UN37 AC079684.1-201ENST00000621405 437 ntBASIC3.6□□□□□ -1.83
VPS4AQ9UN37 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.6□□□□□ -1.83
VPS4AQ9UN37 U6.105-201ENST00000637379 88 ntBASIC3.6□□□□□ -1.83
VPS4AQ9UN37 AF127577.6-201ENST00000623352 2191 ntBASIC3.6□□□□□ -1.83
VPS4AQ9UN37 ASNSP3-201ENST00000451989 1306 ntBASIC3.6□□□□□ -1.83
VPS4AQ9UN37 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.6□□□□□ -1.83
VPS4AQ9UN37 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
VPS4AQ9UN37 ZNF826P-207ENST00000622273 1910 ntBASIC3.6□□□□□ -1.83
VPS4AQ9UN37 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
VPS4AQ9UN37 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.59□□□□□ -1.83
VPS4AQ9UN37 OR4G1P-203ENST00000641984 1631 ntBASIC3.59□□□□□ -1.83
VPS4AQ9UN37 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
VPS4AQ9UN37 CBX3P1-201ENST00000325243 554 ntBASIC3.59□□□□□ -1.83
VPS4AQ9UN37 Y_RNA.72-201ENST00000362894 103 ntBASIC3.59□□□□□ -1.83
VPS4AQ9UN37 U8.11-201ENST00000384699 133 ntBASIC3.59□□□□□ -1.83
VPS4AQ9UN37 U8.12-201ENST00000384701 133 ntBASIC3.59□□□□□ -1.83
VPS4AQ9UN37 RNU6-817P-201ENST00000391083 104 ntBASIC3.59□□□□□ -1.83
VPS4AQ9UN37 RN7SKP140-201ENST00000411196 284 ntBASIC3.59□□□□□ -1.83
VPS4AQ9UN37 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.59□□□□□ -1.83
VPS4AQ9UN37 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.59□□□□□ -1.83
VPS4AQ9UN37 AC008850.1-201ENST00000427546 362 ntBASIC3.59□□□□□ -1.83
VPS4AQ9UN37 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC3.59□□□□□ -1.83
VPS4AQ9UN37 AC098614.3-201ENST00000438957 440 ntBASIC3.59□□□□□ -1.83
VPS4AQ9UN37 snoU13.4-201ENST00000458916 104 ntBASIC3.59□□□□□ -1.83
VPS4AQ9UN37 U8.18-201ENST00000459285 133 ntBASIC3.59□□□□□ -1.83
VPS4AQ9UN37 HMGN2P26-201ENST00000463169 339 ntBASIC3.59□□□□□ -1.83
VPS4AQ9UN37 RPL21P104-201ENST00000464143 478 ntBASIC3.59□□□□□ -1.83
VPS4AQ9UN37 VN1R17P-201ENST00000472048 1090 ntBASIC3.59□□□□□ -1.83
VPS4AQ9UN37 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.59□□□□□ -1.83
VPS4AQ9UN37 AC010486.1-201ENST00000511793 424 ntBASIC3.59□□□□□ -1.83
VPS4AQ9UN37 RN7SKP18-201ENST00000516005 275 ntBASIC3.59□□□□□ -1.83
VPS4AQ9UN37 RNU6-927P-201ENST00000516199 100 ntBASIC3.59□□□□□ -1.83
VPS4AQ9UN37 RNU6-390P-201ENST00000516259 103 ntBASIC3.59□□□□□ -1.83
VPS4AQ9UN37 RNA5SP164-201ENST00000516533 110 ntBASIC3.59□□□□□ -1.83
VPS4AQ9UN37 AC093331.1-201ENST00000521474 169 ntBASIC3.59□□□□□ -1.83
VPS4AQ9UN37 ADI1P3-201ENST00000549509 470 ntBASIC3.59□□□□□ -1.83
VPS4AQ9UN37 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.59□□□□□ -1.83
VPS4AQ9UN37 MIR3921-201ENST00000577308 85 ntBASIC3.59□□□□□ -1.83
VPS4AQ9UN37 MIR3690-201ENST00000580266 75 ntBASIC3.59□□□□□ -1.83
VPS4AQ9UN37 UBE2V2P2-201ENST00000587677 504 ntBASIC3.59□□□□□ -1.83
VPS4AQ9UN37 AC104763.2-201ENST00000604179 382 ntBASIC3.59□□□□□ -1.83
VPS4AQ9UN37 AC005000.2-201ENST00000605468 310 ntBASIC3.59□□□□□ -1.83
VPS4AQ9UN37 RNU6-89P-201ENST00000606519 100 ntBASIC3.59□□□□□ -1.83
VPS4AQ9UN37 AL589994.2-201ENST00000621124 579 ntBASIC3.59□□□□□ -1.83
VPS4AQ9UN37 AC009033.1-201ENST00000624279 431 ntBASIC3.59□□□□□ -1.83
VPS4AQ9UN37 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.59□□□□□ -1.83
VPS4AQ9UN37 MTND5P42-201ENST00000637720 498 ntBASIC3.59□□□□□ -1.83
VPS4AQ9UN37 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
VPS4AQ9UN37 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.59□□□□□ -1.84
VPS4AQ9UN37 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
VPS4AQ9UN37 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
VPS4AQ9UN37 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
VPS4AQ9UN37 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
VPS4AQ9UN37 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.58□□□□□ -1.84
VPS4AQ9UN37 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
VPS4AQ9UN37 RNU6-600P-201ENST00000362524 99 ntBASIC3.58□□□□□ -1.84
VPS4AQ9UN37 Y_RNA.86-201ENST00000363020 111 ntBASIC3.58□□□□□ -1.84
VPS4AQ9UN37 U3.12-201ENST00000364498 214 ntBASIC3.58□□□□□ -1.84
VPS4AQ9UN37 RNVU1-14-201ENST00000384770 164 ntBASIC3.58□□□□□ -1.84
VPS4AQ9UN37 MIR514A1-201ENST00000385133 98 ntBASIC3.58□□□□□ -1.84
VPS4AQ9UN37 UBE2V1P2-201ENST00000397758 440 ntBASIC3.58□□□□□ -1.84
VPS4AQ9UN37 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS4AQ9UN37 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC3.58□□□□□ -1.84
VPS4AQ9UN37 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC3.58□□□□□ -1.84
VPS4AQ9UN37 RPL7P46-201ENST00000425129 740 ntBASIC3.58□□□□□ -1.84
VPS4AQ9UN37 HMGB1P12-201ENST00000438594 598 ntBASIC3.58□□□□□ -1.84
VPS4AQ9UN37 USP9YP8-201ENST00000441913 500 ntBASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 123.9 ms